Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l11
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.57 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   9.2  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   9.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 294 IVRTPGGRLVYQYVKKPKKI 235
           + +  G RLVYQ+V  PK I
Sbjct: 527 LAKVDGQRLVYQFVDVPKDI 546


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 398 LHHSNHW*LL*FSKFLVRLH 457
           +HH+NH  +L  S FL   H
Sbjct: 281 VHHANHHAILGHSGFLCERH 300


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 247 LFDILINQAATRCPY 291
           LFD+  N++  +CPY
Sbjct: 550 LFDLDYNESEEQCPY 564


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 105 VKQRIVRAFLIEEQKIVKV 49
           + + I+R FLI +QK  K+
Sbjct: 73  ITRYIIRMFLISQQKTSKL 91


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 105 VKQRIVRAFLIEEQKIVKV 49
           + + I+R FLI +QK  K+
Sbjct: 56  ITRYIIRMFLISQQKTSKL 74


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 220 LTTPWDLLGLFDILI 264
           +TTPWD   ++  L+
Sbjct: 168 ITTPWDYYYIYHTLV 182


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 220 LTTPWDLLGLFDILI 264
           +TTPWD   ++  L+
Sbjct: 183 ITTPWDYYYIYHTLV 197


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 220 LTTPWDLLGLFDILI 264
           +TTPWD   ++  L+
Sbjct: 71  ITTPWDYYYIYHTLV 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,505
Number of Sequences: 438
Number of extensions: 2592
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)