Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10l10
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 231 7e-62
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 196 3e-51
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 178 9e-46
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 168 7e-43
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 145 6e-36
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 119 4e-28
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 106 4e-24
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 85 1e-17
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 60 5e-10
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 28 1.9
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 27 3.2
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 4.3
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 27 4.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.3
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 5.7
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 7.5
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 26 7.5
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 7.5
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 9.9
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 231 bits (566), Expect = 7e-62
Identities = 105/146 (71%), Positives = 117/146 (80%)
Frame = -2
Query: 741 KLVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSI 562
++V +L DV PKT NFRALCTGEKG+GY GS FHRVIP FMLQGGDFT NGTGGKSI
Sbjct: 17 RIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDFTRGNGTGGKSI 76
Query: 561 YGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEV 382
YG KF DENF LKH PG+LSMANAG +TNGSQFFITTV T WLDG+HVVFG V EGM+V
Sbjct: 77 YGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDV 136
Query: 381 VKQIETFGSQSGKTSKRIVIKDCGQI 304
VK++E+ GS SG T RIVI CG +
Sbjct: 137 VKKVESLGSNSGATRARIVIDKCGTV 162
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 196 bits (478), Expect = 3e-51
Identities = 88/124 (70%), Positives = 101/124 (81%)
Frame = -2
Query: 741 KLVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSI 562
++ I L PKT ENFRAL TGEKGFGY+GSIFHRVIPNFM+QGGD T +GTGGKSI
Sbjct: 42 RVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSI 101
Query: 561 YGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEV 382
YG++F DENF L H PG+LSMANAG D+NGSQFFITTVKT WLDG HVVFG V+ G ++
Sbjct: 102 YGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDI 161
Query: 381 VKQI 370
VK+I
Sbjct: 162 VKKI 165
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 178 bits (433), Expect = 9e-46
Identities = 87/147 (59%), Positives = 105/147 (71%), Gaps = 4/147 (2%)
Frame = -2
Query: 738 LVIELRSDVTPKTCENFRALCTGEKGFG----YKGSIFHRVIPNFMLQGGDFTNHNGTGG 571
+ EL +V PKT +NF +LC G + G YKGS FHRVI NFMLQGGDFT NGTGG
Sbjct: 19 IYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGG 78
Query: 570 KSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEG 391
+SIYG KFEDENF LKH P +LSMANAG +TNGSQFFITTV T LDG+HVVFG V++G
Sbjct: 79 ESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQG 138
Query: 390 MEVVKQIETFGSQSGKTSKRIVIKDCG 310
V+ IE +++ +VI++CG
Sbjct: 139 KSTVRTIENLETKNDDPVVPVVIEECG 165
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 168 bits (409), Expect = 7e-43
Identities = 81/154 (52%), Positives = 106/154 (68%), Gaps = 8/154 (5%)
Frame = -2
Query: 741 KLVIELRSDVTPKTCENFRALCTGE------KGFGYKGSIFHRVIPNFMLQGGDFTNHNG 580
++ I L S + PKT ENFR CTGE K GYK S FHR+I FM+QGGDF + +G
Sbjct: 20 RIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDG 79
Query: 579 TGGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 403
TG +I+ ++ F DENFTLKH PG+LSMANAG D+NG QFFITTV +LDG+HVVFG
Sbjct: 80 TGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGE 139
Query: 402 VVEGMEVVKQIE-TFGSQSGKTSKRIVIKDCGQI 304
V+EG ++VK+IE T + + + I +CG++
Sbjct: 140 VIEGYDIVKEIESTPVGANSRPKSNVAIVECGEM 173
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 145 bits (352), Expect = 6e-36
Identities = 71/125 (56%), Positives = 92/125 (73%), Gaps = 1/125 (0%)
Frame = -2
Query: 741 KLVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSI 562
K++IEL ++ PKTC+NF L ++G+ Y G IFHRVIP+F++QGGD T G GG SI
Sbjct: 12 KILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFVIQGGDPTG-TGRGGTSI 67
Query: 561 YGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGME 385
YG+KF+DE + L HTG G+LSMANAG +TN SQFFIT T WLDG+H +FG VV G+
Sbjct: 68 YGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLS 127
Query: 384 VVKQI 370
V K++
Sbjct: 128 VCKRM 132
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 119 bits (287), Expect = 4e-28
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Frame = -2
Query: 732 IELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGN 553
I+L + PK +NF E G+ Y +IFHR+I NFM+QGGD +GTGG+SI+
Sbjct: 468 IKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGGDPLG-DGTGGESIWKK 523
Query: 552 KFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVK 376
FEDE + LKH P +SMAN+G +TNGSQFFITT T WLDG+H +F G++VV
Sbjct: 524 DFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGLDVVH 583
Query: 375 QIE 367
+IE
Sbjct: 584 RIE 586
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 106 bits (254), Expect = 4e-24
Identities = 59/134 (44%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 732 IELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGN 553
IEL +D P NF L ++G+ Y+ +IFHR I FM+QGGD + G GG+SI+G
Sbjct: 289 IELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGGD-PSGTGRGGQSIWGK 344
Query: 552 KFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVK 376
F+DE LKH G++SMAN G +TNGSQFFI LD +H +FG VV G+ V+
Sbjct: 345 PFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGLNVLD 404
Query: 375 QIETFGSQSGKTSK 334
+E + S K
Sbjct: 405 ALEKVPTNSNDHPK 418
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 85.0 bits (201), Expect = 1e-17
Identities = 50/113 (44%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Frame = -2
Query: 732 IELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGN 553
IEL PK C NF LC +G+ Y G+I HRV+P F++QGGD T G GG+SIYG
Sbjct: 26 IELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTG-TGMGGESIYGE 81
Query: 552 KFEDENF-TLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 397
F E L+ G++ MA + N SQFFIT T +G+ +FG VV
Sbjct: 82 PFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 59.7 bits (138), Expect = 5e-10
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Frame = -2
Query: 738 LVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIY 559
LVI+L PKTCENF LC K Y F+ + N+ Q GD G GG+ ++
Sbjct: 12 LVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGDGGRCVW 68
Query: 558 -----GNKFEDENF--TLKHTGPGVLSMANAGADTN-------GSQFFIT-TVKTSWLDG 424
G +F F +L H G++SM+ A + GSQF IT + LD
Sbjct: 69 NVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDNLEGLDE 128
Query: 423 RHVVFGNVVEGMEVVKQI-ETFGSQSGKTSKRIVIK 319
R+ ++G V EG + + +I + + G+ + I IK
Sbjct: 129 RYPIYGQVAEGFDTLLKINDAICDEEGQPYRDIRIK 164
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -3
Query: 653 TRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLSTLDLASS 501
+RA S++S I KE +P+ITA SP +A S + ISP + + +S
Sbjct: 321 SRAAASLLS--ILDSKEKNTPSITAKAGSPQSAPSKASYISPYARPGITTS 369
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 344 FPDWLPKVSICLTTSMPSTTFPKTTCLPS 430
FP WL K S CL +P T+ P T + S
Sbjct: 302 FP-WLKKNSFCLYLPIPLTSIPSTPSIRS 329
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 4.3
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 472 WFPVLHHHC 446
WFP +HHHC
Sbjct: 97 WFPEVHHHC 105
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 310 TTVFDNDSLRGLPRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELG 468
T VFD + +L+ ++++DN +IPK+ A S + +G
Sbjct: 525 TVVFDKTGTLTVGKLSVTDISIVDNLEELLDIPKNIFWAFVKASESSSEHPIG 577
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 692 TSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLST 519
TS C + S+ S +S+PI+ TS + T++ P++ S T SPL T
Sbjct: 225 TSTSCTTS--TSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -3
Query: 692 TSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLST 519
TS C + T S+ S+PI+ TS + T++ P++ S T SPL T
Sbjct: 168 TSTSCTTSTSIPPTGGSSSL-STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 377 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 526
LT +P TTF T +P + +V ++++ PL+ + P PV L
Sbjct: 37 LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 600 DFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGVLSMANAGADTNGSQFFI 454
D + T KS+YG +D+N F + T V+ ADT Q F+
Sbjct: 11 DLEKYPSTATKSVYGQSKDDKNVFDIHPTESEVIPGEVEYADTPSHQNFL 60
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 741 KLVIELRSDVTPKTC-ENFRAL 679
+L++ L SD+ PK C NF+AL
Sbjct: 1135 QLMLRLHSDIYPKICISNFKAL 1156
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 7.5
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 359 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 538
P S + +S +++ T+ P+S EV T P+ S+ A + E + G V
Sbjct: 162 PASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPT 221
Query: 539 SSSNL 553
SSS++
Sbjct: 222 SSSSI 226
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.9
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = +1
Query: 388 HAFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARSSVLKG------EILVFK 549
H N P + P +S EL + IS+G+DA S VLK E++V +
Sbjct: 228 HELNESPSTPTAPDFPH-YNSSPSELSPTQRRSSISNGKDAPSPVLKDLTSYTQEVIVCR 286
Query: 550 LIAVDGLSPS 579
LSPS
Sbjct: 287 KFLHHSLSPS 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,108
Number of Sequences: 5004
Number of extensions: 78741
Number of successful extensions: 258
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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