Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l08
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    50   4e-07
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    33   0.053
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    28   1.5  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   2.0  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    28   2.0  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    28   2.0  
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce...    27   2.6  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    27   2.6  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    27   4.6  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   6.0  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    26   8.0  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    26   8.0  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   8.0  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 27/79 (34%), Positives = 41/79 (51%)
 Frame = -1

Query: 635 YDGVHFLRAGLLYKKIQVPGQTLPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTG 456
           YD   F   G+ +K++     T+P  S+V+EFID  EE  E     ++ VHC  G+ RTG
Sbjct: 238 YDKKTFENVGIRHKEMYFEDGTVPELSLVKEFIDLTEEVEE---DGVIAVHCKAGLGRTG 294

Query: 455 YMVCRYLMHTLGIAPQEAI 399
            ++  YL++       E I
Sbjct: 295 CLIGAYLIYKHCFTANEVI 313


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 506 PGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRF-EK--ARGH 372
           P + + VHC  G  RTG ++C YL+   G+  ++++  + EK   RGH
Sbjct: 121 PLLTLVVHCKAGKGRTGTVICSYLVAFGGLTAKQSLELYTEKRMVRGH 168


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 488 VHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVQ 345
           VHC  GI+R+  +V  YLM       +EA++   + R       N+++
Sbjct: 129 VHCFAGISRSVTLVAAYLMKENNWNTEEALSHINERRSGISPNANFLR 176


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 179 IFSTTMLAASMLRLCFWLSTYVFWPVIAVNVV 84
           I   TM+    LR  +WLST +F P++   V+
Sbjct: 702 IMQLTMMGLMSLRKAYWLSTVIF-PLLCFTVI 732


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -1

Query: 716 DVWTTEQIVKQNPSIGAIIDLTNTSKYY---DGVHFLRAGLLYKKIQVPGQ 573
           + W++E+  +Q+  I  +I + NTS  Y   +     + GL+Y+KI  P +
Sbjct: 237 ETWSSEKRKRQSSLIPDLITMKNTSSSYSLEELTSVQQMGLVYEKIVFPSR 287


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 992

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 94   TAITGQKTYVESQKHKRNIDAANIVVENIRPNPTVDWNNATDRLQSKRSKRSI 252
            T   GQ++  +SQ    N   A   V   +P    +WN+A   + SK++K+ +
Sbjct: 940  TGKDGQQSNNKSQSELGNSSGAWSQVVRNKPKQGTEWNSAFKVVTSKKNKKRV 992


>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 611 AGLLYKKIQ--VPGQTLPSESIVQEFIDTVEEFTE 513
           AG L  ++   +P  TLP + IVQ  +D   EFT+
Sbjct: 142 AGFLKMRVAPTMPALTLPRDKIVQGVVDPAVEFTK 176


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 202 WNNATDRLQSKRSKRSISFDSLEEAQQF 285
           W+ A+D+++     R   FDS E AQ+F
Sbjct: 23  WDEASDQVKGYGGNRYKKFDSYEAAQEF 50


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 128 AKSTNVTSTL--PTLWWRISGLILPSIGTTPLIGYKVNVASE 247
           A+ T  T+ +  P++W R+ G +L     T L+G ++ ++S+
Sbjct: 104 AEETKPTTVVKKPSIWQRVKGGVLHFWDGTKLLGVEIKISSK 145


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 179 IFSTTMLAASMLRLCFWLSTYVFWPVIAVNVVPSR 75
           +F+ T+  A ++ LCF+   Y  +PV A+  +  R
Sbjct: 316 LFTITLSIALLVTLCFYDVKYARYPVFALKSLKDR 350


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 139 KRNIDAANIVVENIRPNPTVDW 204
           KR  + AN   EN++P P  DW
Sbjct: 288 KRKAENANRAAENLQPLPLDDW 309


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 72  HAQHRMFALVRGVLNRAIRQIYHL 1
           HA +R +A  R  L +AI+ IYH+
Sbjct: 49  HASYRGYAYSRHGLYKAIKHIYHV 72


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 92  NVVPSRVTHSTGCLRLSAGY*TARSDKSI 6
           +V+P    HS  C R S+ Y  A  +KSI
Sbjct: 222 SVIPDSSFHSVACYRASSHYKEAPVEKSI 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,538,679
Number of Sequences: 5004
Number of extensions: 73344
Number of successful extensions: 212
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)