Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10l08
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 81 1e-15
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 80 2e-15
05_01_0120 - 828834-831143 38 0.008
12_01_0219 - 1651833-1651987,1652172-1652471,1652889-1652967,165... 30 2.1
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169... 30 2.1
10_08_0904 + 21464762-21467479 30 2.1
01_06_0195 + 27379266-27379300,27379870-27382174 29 3.6
04_03_0446 - 16012926-16013042,16013266-16013469 29 4.8
03_01_0196 + 1559190-1560395 29 4.8
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 8.4
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 28 8.4
05_03_0043 - 7702940-7703077,7703361-7703420,7703562-7703612,770... 28 8.4
01_06_0117 + 26605186-26605443,26605540-26605583,26605659-266057... 28 8.4
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 80.6 bits (190), Expect = 1e-15
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Frame = -1
Query: 764 KTPLQPELFAYVTSEEDVWTTEQIV----KQNPSIGAIIDLTNTSKYYDGVHFLRAGLLY 597
K PL E F ++++Q+V K IG +IDLTNT++YY + R G Y
Sbjct: 102 KVPLD-ETFNESVPAGKRYSSKQVVNKQRKAGRDIGLVIDLTNTTRYYSPTEWTRQGTKY 160
Query: 596 KKIQVPGQ-TLPSESIVQEFIDTVEEFTEKCPGM----LVGVHCTHGINRTGYMVCRYLM 432
KI G+ +P V F+ V F ++ + VHCTHG NRTG+M+ YLM
Sbjct: 161 VKIACKGRDAVPDNESVNTFVYEVMAFLDRQKQSRNPKYILVHCTHGHNRTGFMIVHYLM 220
Query: 431 HTLGIAPQEAINRFEKARGHKIERQNYVQ 345
T + EA+N F + R I + +Y+Q
Sbjct: 221 RTQLSSVTEALNIFAQRRPPGIYKNDYIQ 249
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 80.2 bits (189), Expect = 2e-15
Identities = 46/116 (39%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Frame = -1
Query: 674 IGAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ-TLPSESIVQEFIDTVEEFTE----- 513
IG +IDLTNT++YY + R G+ + KI G+ +P V F+ V F +
Sbjct: 163 IGLVIDLTNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQS 222
Query: 512 KCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVQ 345
K P ++ VHCTHG NRTG+M+ YLM T EAIN F K R I +++Y++
Sbjct: 223 KNPKYIL-VHCTHGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIE 277
>05_01_0120 - 828834-831143
Length = 769
Score = 38.3 bits (85), Expect = 0.008
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -1
Query: 620 FLRAGLLYKKIQVPGQTLPSESIVQEFIDTVEEFTE-KCPGMLVGVHCTHGINRTGYMVC 444
+ ++ L+Y+ + + Q P+E I D + F + + G V VHC G++R+ +V
Sbjct: 185 YFKSDLVYRTLWL--QDSPTEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI 242
Query: 443 RYLMHTLGIAPQEAINRFEKARG 375
YLM G + +A + ARG
Sbjct: 243 AYLMWREGQSFDDAFQLVKAARG 265
>12_01_0219 -
1651833-1651987,1652172-1652471,1652889-1652967,
1653047-1653111,1653236-1653288,1653666-1654084
Length = 356
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = -1
Query: 608 GLLYKKIQVPGQTLPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 429
GL ++ VP + E+++ ++ E V VHC G++R+ ++ YLM
Sbjct: 91 GLRVTRMAVPLRDTEEENLLDHLEPCLDFIDEGRKEGNVLVHCFAGVSRSATIIVAYLMR 150
Query: 428 TLGIAPQEAINRFEK 384
T + +EA+ ++
Sbjct: 151 TEQKSLEEALESLKE 165
>11_01_0217 -
1698721-1698875,1699122-1699421,1699840-1699918,
1699998-1700062,1700187-1700239,1700654-1701072
Length = 356
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = -1
Query: 608 GLLYKKIQVPGQTLPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 429
GL ++ VP + E+++ ++ E V VHC G++R+ ++ YLM
Sbjct: 91 GLRVTRMAVPLRDTEEENLLDHLEPCLDFIDEGRKEGNVLVHCFAGVSRSATIIVAYLMR 150
Query: 428 TLGIAPQEAINRFEK 384
T + +EA+ ++
Sbjct: 151 TEQKSLEEALESLKE 165
>10_08_0904 + 21464762-21467479
Length = 905
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = -1
Query: 587 QVPGQTLPSESIVQEFID-TVEEFTEKCPGMLVGVHCTHGINRTGY-----MVCRYLMHT 426
Q+ GQ + E + E+I T+ + KC M + + + + M+C Y +H
Sbjct: 616 QIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHG 675
Query: 425 LGIAPQEAINRFEKARGHKI 366
LG+ EA+ FE+ + +
Sbjct: 676 LGV---EALRMFERMQKENV 692
>01_06_0195 + 27379266-27379300,27379870-27382174
Length = 779
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 52 CACPRGIEPRDPTNLS 5
C+CP G E RDPTN S
Sbjct: 293 CSCPPGYEMRDPTNWS 308
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 27 GSIPRGQAQTSGAVRDARRHYVYGYYRPKDVRGKPKAQT 143
G +PRG + G + + RR G +R + G P ++
Sbjct: 22 GGVPRGAEVSGGGLEEERRRQAKGSWRWRQAEGSPAGRS 60
>03_01_0196 + 1559190-1560395
Length = 401
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 51 QTSGAVRDARR-HYVYGYYRPKDVRGKPKAQT*HRRCQHCGGE 176
Q+ +++A R H + Y+ PK +RG P A T GG+
Sbjct: 80 QSLAGIKNALRLHAILDYFDPKKIRGLPDADTMTDTLYQAGGD 122
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/89 (24%), Positives = 37/89 (41%)
Frame = +1
Query: 13 LSDRAVQYPADKRKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNP 192
L+D A+ +PA+KR V C+T TA+ +Y R++ N++
Sbjct: 1687 LADPALDFPAEKRHEMVSCLTNVVVYETAMPLTVSYQVGLSSGRSL--------NVKSAR 1738
Query: 193 TVDWNNATDRLQSKRSKRSISFDSLEEAQ 279
W R+ R+ S S ++ E Q
Sbjct: 1739 IFRWEREESRIFMTRNFGSASLENAERVQ 1767
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 6/25 (24%)
Frame = +2
Query: 404 LPAAQYPGCALN------ICTPCNR 460
+PA Q+PGC +N +CT CN+
Sbjct: 236 IPACQHPGCKINGRTRIMVCTGCNK 260
>05_03_0043 -
7702940-7703077,7703361-7703420,7703562-7703612,
7705355-7705408,7707260-7707325,7707552-7707629,
7708568-7708970,7710492-7710493,7711076-7711078
Length = 284
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 554 CFQTAKSGQVLEFFCITGPPAKSAHHHN 637
C T+ +L+F PP +HHHN
Sbjct: 103 CITTSLGSNMLDFSNTAAPPELRSHHHN 130
>01_06_0117 +
26605186-26605443,26605540-26605583,26605659-26605737,
26605822-26605944,26606300-26606482,26606562-26606648,
26608149-26608255,26608387-26608474,26608805-26608885,
26608983-26609059,26609183-26609318,26609548-26609610,
26609983-26610563,26610816-26610933
Length = 674
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 49 RKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNP-TVDWNN 210
R +P + V R G TA+ + Y+ Q +R + ++E + PNP T +W N
Sbjct: 392 RINPSVDVIRWGLGSTAVRMAEDYIYGQHQRRRLAYFVELMEVLNPNPRTENWLN 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,150,969
Number of Sequences: 37544
Number of extensions: 481905
Number of successful extensions: 1262
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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