Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l08
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   8.4  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 246 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTFVLLAFHVR 115
           +L   TL  +S  +P+ G     I+     SV +T ++L FH R
Sbjct: 241 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 246 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTFVLLAFHVR 115
           +L   TL  +S  +P+ G     I+     SV +T ++L FH R
Sbjct: 241 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 246 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTFVLLAFHVR 115
           +L   TL  +S  +P+ G     I+     SV +T ++L FH R
Sbjct: 241 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = -3

Query: 555 HRSRIY*HGRRIYRKVSRHVGGRALHTRH*SHRLHGVQIFNAHPGYCAAGS 403
           H+ ++    R + R++ +      LH  H  H LHG+         C  G+
Sbjct: 110 HKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGLHGLSSSAPTGSSCGPGA 160


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 743 LFAYVTSEEDVWTTEQIV--KQNPSIGAIIDLTNTSKYYDGVHFLR 612
           L+ Y+TS  D W +  +V  K  P  G   DL    K     HF++
Sbjct: 18  LYYYLTSTFDFWKSRGVVGPKPVPFFGTTKDLILVKK--STAHFVK 61


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 246 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTFVLLAFHVR 115
           +L   TL  +S  +P+ G     I+     SV +T ++L FH R
Sbjct: 309 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNFHHR 352


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = -3

Query: 141 FVLLAFHVRLLAGNSRKRSAVARHAQHRMFALVRGVLNRAIRQI 10
           F+L AF +  +   + KR   A+H ++ ++A +  +++   ++I
Sbjct: 312 FILSAFDMARIIQITPKRIQYAQHKENELYANLMKIVHEKQQEI 355


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = -3

Query: 141 FVLLAFHVRLLAGNSRKRSAVARHAQHRMFALVRGVLNRAIRQI 10
           F+L AF +  +   + KR   A+H ++ ++A +  +++   ++I
Sbjct: 350 FILSAFDMARIIQITPKRIQYAQHKENELYANLMKIVHEKQQEI 393


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 420 TQGVH*ISAHHVTGAINAVCAMHAHQHAGTLFCKFFYR 533
           T G   +S  H++ +  A+   HA   A    C++ Y+
Sbjct: 296 TTGTKCVSGEHLSVSGGALNDCHAEVVARRCLCEYLYK 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,041
Number of Sequences: 438
Number of extensions: 5097
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)