Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l07
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    53   4e-08
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    27   3.4  

>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 28/100 (28%), Positives = 48/100 (48%)
 Frame = -2

Query: 821 NPKDXLYKAVENCKPLLQLQPIKRGGITYQVPGPITEKRSLFLAIKWLLETTDEKERTVH 642
           NP D L +A+    PL++L   KR   + + P P+ E++   +A++W+L    +      
Sbjct: 160 NPIDVLKQAIAEISPLMKLVSAKRFNKSVEFPMPLKERQRRRIALQWILGEC-KSSSPKR 218

Query: 641 FPEQFAWELLEASNNTGKVVKRKQDLHRQCEANRAYAHYR 522
             ++   E++   + T    K+K  LHR C  NR  A  R
Sbjct: 219 LSDRIVKEIIAIRSKTSNCFKKKDHLHRMCLVNRGNAPVR 258


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -2

Query: 722 PITEKRSLFLAIKWLLETTDEKERTVHFPEQFAWELLEASNNTGKVVKR 576
           PIT K SL   I ++ E  D KE     P QF W +       G +VK+
Sbjct: 26  PIT-KSSLMYPI-FISEIDDAKEAIDSMPNQFRWGVNRLEEFLGPLVKK 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,340,075
Number of Sequences: 5004
Number of extensions: 65732
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)