Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l07
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0508 - 3674787-3675140,3675257-3675566,3675672-3675806,367...    28   8.2  
03_06_0395 + 33616304-33616494,33616863-33617095,33617213-336173...    28   8.2  

>06_01_0508 -
           3674787-3675140,3675257-3675566,3675672-3675806,
           3675891-3676100,3676193-3677359,3677397-3677587
          Length = 788

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 72  YTIAIKKVLYNSI*AGGYLKDDWNCSRNFH 161
           +TI I  V YNS+  G ++  DW+   + H
Sbjct: 474 HTIHIASVAYNSVFLGEFMLPDWDMFHSLH 503


>03_06_0395 +
           33616304-33616494,33616863-33617095,33617213-33617303,
           33617882-33617930,33618123-33618214,33618285-33618398,
           33618473-33619172,33619269-33619336,33619626-33619760,
           33619862-33620079,33620169-33620593
          Length = 771

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 72  YTIAIKKVLYNSI*AGGYLKDDWNCSRNFH 161
           +TI I  V YN++  G +++ DW+   + H
Sbjct: 464 HTIHISSVAYNTLFLGEFMQPDWDMFHSLH 493


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,190,133
Number of Sequences: 37544
Number of extensions: 385178
Number of successful extensions: 864
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)