Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l07
         (852 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000241-1|AAH00241.1|  242|Homo sapiens mitochondrial ribosomal...   116   8e-26
AK222995-1|BAD96715.1|  242|Homo sapiens mitochondrial ribosomal...   114   3e-25

>BC000241-1|AAH00241.1|  242|Homo sapiens mitochondrial ribosomal
           protein S7 protein.
          Length = 242

 Score =  116 bits (280), Expect = 8e-26
 Identities = 52/112 (46%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
 Frame = -2

Query: 851 TGRKKPKIELNPKDXLYKAVENCKPLLQLQPIKRGGITYQVPGPITEKRSLFLAIKWLL- 675
           +  ++  IE NP    ++A++NC+P++ L PI +GG  YQVP P+ ++R  FLA+KW++ 
Sbjct: 130 SAEEQATIERNPYTIFHQALKNCEPMIGLVPILKGGRFYQVPVPLPDRRRRFLAMKWMIT 189

Query: 674 ETTDEKERTVHFPEQFAWELLEASNNTGKVVKRKQDLHRQCEANRAYAHYRW 519
           E  D+K +    PE+ + +LLEA +N G V+KRK DLH+  EANRA AHYRW
Sbjct: 190 ECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRKHDLHKMAEANRALAHYRW 241


>AK222995-1|BAD96715.1|  242|Homo sapiens mitochondrial ribosomal
           protein S7 variant protein.
          Length = 242

 Score =  114 bits (275), Expect = 3e-25
 Identities = 51/112 (45%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
 Frame = -2

Query: 851 TGRKKPKIELNPKDXLYKAVENCKPLLQLQPIKRGGITYQVPGPITEKRSLFLAIKWLL- 675
           +  ++  IE NP    ++A++NC+P++ L PI +GG  YQVP P+ ++R  FLA+KW++ 
Sbjct: 130 SAEEQATIERNPYTIFHQALKNCEPMIGLVPILKGGRFYQVPVPLPDRRRRFLAMKWMIT 189

Query: 674 ETTDEKERTVHFPEQFAWELLEASNNTGKVVKRKQDLHRQCEANRAYAHYRW 519
           E  D+K +    PE+ + +LLEA +N G V+KR  DLH+  EANRA AHYRW
Sbjct: 190 ECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRSHDLHKMAEANRALAHYRW 241


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,225,772
Number of Sequences: 237096
Number of extensions: 2378350
Number of successful extensions: 7684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7679
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)