Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l07
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-45|CAC70123.2|  222|Caenorhabditis elegans Hypothetical p...   105   4e-23
AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical ...    28   7.3  

>Z99281-45|CAC70123.2|  222|Caenorhabditis elegans Hypothetical
           protein Y57G11C.34 protein.
          Length = 222

 Score =  105 bits (252), Expect = 4e-23
 Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
 Frame = -2

Query: 842 KKPKIELNPKDXLYKAVENCKPLLQLQPIKRGGITYQVPGPITEKRSLFLAIKWLLET-- 669
           +K  IEL+P     K ++NC PL++LQ + RGG TYQVP PI E  + F A+K + +   
Sbjct: 113 EKKSIELDPFLVAKKGIKNCHPLMKLQGVTRGGTTYQVPFPIEEPEAEFRAMKMMRDICR 172

Query: 668 TDEKERTVHFPEQFAWELLEASNNTGKVVKRKQDLHRQCEANRAYAHYR 522
              K    HF +  A ELL AS N G  ++ KQ+LH+ CEANRAYAHYR
Sbjct: 173 VRSKHGETHFKDILATELLAASQNEGSTIQAKQELHKTCEANRAYAHYR 221


>AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical
           protein T13G4.2 protein.
          Length = 154

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -3

Query: 820 ILRXFYIKPLKIANHCYNYSPSRGV----VSHTRCL 725
           I R  Y +PL   +HC+  +PS  +     SH+ C+
Sbjct: 53  IERGVYYRPLNFTDHCFKMTPSANIGTMPCSHSMCV 88


>Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 151 VIFIKLQLLTAYLFHNCFKKIYLYL*LEKVL 243
           V  + L LL + + H+CF+K YL L ++ V+
Sbjct: 300 VYCVALTLLISVIVHHCFEKQYLQLGIKSVI 330


>Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 151 VIFIKLQLLTAYLFHNCFKKIYLYL*LEKVL 243
           V  + L LL + + H+CF+K YL L ++ V+
Sbjct: 300 VYCVALTLLISVIVHHCFEKQYLQLGIKSVI 330


>AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical
           protein ZK1055.2 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 481 FYCYFIRTEYCYCHL 525
           FYCYF  T  CYC +
Sbjct: 3   FYCYFSETVRCYCKI 17


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,672,079
Number of Sequences: 27780
Number of extensions: 379388
Number of successful extensions: 925
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)