Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l06
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    28   0.37 
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   2.0  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   2.6  
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa...    25   2.6  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    24   4.6  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    24   6.1  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    24   6.1  
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    23   8.1  

>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 37  YVLHLENYVVLRPVDITTYSAYEKSS*FIITNSYFIIR 150
           +V++ EN+  L   D    ++ EKS  FII N +  IR
Sbjct: 296 FVVNAENHFTLSATDFLRNASTEKSHIFIIVNKFDNIR 333


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 34  GYVLHLENYVVLRPVDITTYSAYEKS 111
           GY+ H+E+  V R   +  Y  YE S
Sbjct: 346 GYIRHIEHLQVFRQAMVNYYRLYEDS 371


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 69  ETGRHHNIFSLREEFVIYHNELILYH-QNLILLR 167
           +TG  H + +L +EF      L  YH +NLIL+R
Sbjct: 234 QTGSSHVLINLAQEFDELAKTLPPYHRKNLILVR 267


>SPAC24H6.02c |||TIM23 translocase complex subunit
           Tim15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 290 RNSERYTKKRIENFKVLVKCSKC 222
           R++  ++K+   N  VLV+C KC
Sbjct: 88  RSNHNFSKQAYHNGTVLVQCPKC 110


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 15  SAFLLVWVCASLGELRGFETGRH 83
           S +LL W+ A L  +  F  G+H
Sbjct: 203 STYLLAWIVAELEYVEYFTPGKH 225


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 253 ILKCS*NVLSANTVLTFNSIEFYSTRTPVRNSI 155
           +L+CS  V  A   L  NS + Y T+ P+  +I
Sbjct: 6   LLRCSRAVSLARPDLPRNSPDVYDTKIPILQAI 38


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 204 KVNTVLALRTFHEHFKIFNSLLRVPFAVSLRVVPI 308
           KVNT  A+ T     KIF+    + F V L + P+
Sbjct: 241 KVNTDCAILTSSGKLKIFSKAQNIVFDVLLALEPM 275


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 31  YGYVLHLENYVVLRPVDITTYSAYEKSS*FIIT 129
           YG    + N   +RP+DI T +A  K +  I+T
Sbjct: 265 YGVEAEVINLRSIRPLDINTIAASVKKTNRIVT 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,140,696
Number of Sequences: 5004
Number of extensions: 19478
Number of successful extensions: 42
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)