Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l06
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0194 - 13957709-13957925,13960065-13960129,13960281-139604...    27   2.3  
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535...    27   3.1  
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178...    27   3.1  
06_03_0002 - 15280292-15281550,15282714-15282840                       26   5.4  
11_06_0594 + 25349612-25352530                                         26   7.2  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    26   7.2  
03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178     25   9.5  

>10_07_0194 -
           13957709-13957925,13960065-13960129,13960281-13960454,
           13960847-13960889,13961081-13961225,13961305-13961413,
           13961694-13961822,13961935-13962031,13962639-13962703,
           13963275-13963439
          Length = 402

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 259 LKILKCS*NVLSANTVLTFNSIEFYSTRTPVRNSIKF 149
           L+ILKC+  +LS +T  +   ++ Y+ +TP+ +  KF
Sbjct: 79  LRILKCADVILSEDTRHSGKLLQHYNIKTPLLSFHKF 115


>08_02_1339 +
           26252609-26252925,26253025-26253227,26253379-26253536,
           26253802-26253870,26253980-26254461,26254558-26254766,
           26254865-26254901,26254991-26255075,26255186-26255269,
           26255344-26255412,26255520-26255663
          Length = 618

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 36  VCASLGELRGFETGRHHNIFSLRE 107
           +C +L  +  F+T   HN+FSL E
Sbjct: 100 ICPALDSITSFKTNGGHNLFSLLE 123


>01_06_1488 +
           37716986-37717076,37717424-37717558,37717755-37717831,
           37717934-37718181,37718503-37718559,37718665-37718800,
           37718944-37719001,37719110-37719195,37719270-37719326,
           37719537-37719557,37720553-37720954,37721500-37721647,
           37721940-37722036,37724065-37724202,37724496-37724598,
           37724792-37724828,37724905-37725014,37725141-37725164
          Length = 674

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 4   YYLLVPFYWYGYVLHLENYVVLRPVDITTYSAYEKSS*FIIT 129
           Y++L  F+W  YVL L + ++L  VD      +EK+  FI+T
Sbjct: 152 YFVLWMFFWSCYVLLLSS-MILNKVD-GLQEMFEKTYGFILT 191


>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 305 RNYSKRNSERYTKKRIENFK 246
           R YSKRNS++ TK     FK
Sbjct: 431 RKYSKRNSKKQTKNENPEFK 450


>11_06_0594 + 25349612-25352530
          Length = 972

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 245 VLVKCSKC*YSVNF*LDRILFNPN 174
           +LVKCS C +S+   L  +  NPN
Sbjct: 391 ILVKCSPCIFSMKMLLRFLYANPN 414


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 16   VPFYWYGYVLHLENYVVLRPVDI 84
            VP YW+   LHL N  +L+ +D+
Sbjct: 1439 VPGYWFVESLHLLNNFILKAMDM 1461


>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
          Length = 1122

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 30  VWVCASLGELRGFETGRHHNI 92
           +W+C  LG L+ + TGRH NI
Sbjct: 460 LWMC--LGLLKQYCTGRHENI 478


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,585,501
Number of Sequences: 37544
Number of extensions: 101756
Number of successful extensions: 219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)