Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l06
         (312 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28164-1|AAD28324.1|  520|Homo sapiens spermatogenesis associate...    27   8.8  
BC009481-1|AAH09481.1|  520|Homo sapiens spermatogenesis associa...    27   8.8  
AL031685-1|CAB46029.1|  520|Homo sapiens spermatogenesis associa...    27   8.8  
AB018300-1|BAA34477.2|  534|Homo sapiens KIAA0757 protein protein.     27   8.8  

>U28164-1|AAD28324.1|  520|Homo sapiens spermatogenesis associated
           PD1 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 94  NML*CLPVSKPRSSPSEAHTH 32
           ++L C P SKP + PS+A TH
Sbjct: 400 SLLTCPPASKPSAFPSKASTH 420


>BC009481-1|AAH09481.1|  520|Homo sapiens spermatogenesis associated
           2 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 94  NML*CLPVSKPRSSPSEAHTH 32
           ++L C P SKP + PS+A TH
Sbjct: 400 SLLTCPPASKPSAFPSKASTH 420


>AL031685-1|CAB46029.1|  520|Homo sapiens spermatogenesis associated
           2 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 94  NML*CLPVSKPRSSPSEAHTH 32
           ++L C P SKP + PS+A TH
Sbjct: 400 SLLTCPPASKPSAFPSKASTH 420


>AB018300-1|BAA34477.2|  534|Homo sapiens KIAA0757 protein protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 94  NML*CLPVSKPRSSPSEAHTH 32
           ++L C P SKP + PS+A TH
Sbjct: 414 SLLTCPPASKPSAFPSKASTH 434


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,746,589
Number of Sequences: 237096
Number of extensions: 619118
Number of successful extensions: 1296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)