Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10l06
(312 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine re... 35 0.010
U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical pr... 33 0.055
U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine rec... 28 1.2
Z72515-3|CAA96683.2| 330|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z83233-2|CAB05761.1| 338|Caenorhabditis elegans Hypothetical pr... 27 2.1
AF273797-2|AAG15146.1| 338|Caenorhabditis elegans nuclear recep... 27 2.1
U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein. 27 3.6
AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear recep... 27 3.6
AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear recep... 27 3.6
AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormo... 27 3.6
AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical ... 26 6.4
U88178-7|ABA03111.1| 439|Caenorhabditis elegans Hypothetical pr... 25 8.4
U00044-6|AAA50679.2| 670|Caenorhabditis elegans Bard homolog (t... 25 8.4
AL023856-3|CAA19562.2| 335|Caenorhabditis elegans Hypothetical ... 25 8.4
AC006676-2|AAK71382.3| 439|Caenorhabditis elegans Hypothetical ... 25 8.4
>AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 7 protein.
Length = 330
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 10 LLVPFYWYGYVLHLENYVVLRPVDITTYSAYEKSS*FIITNSYFIIRT*YCYAL 171
++ +W+G+ LH N +VL +D+ Y + T F++R Y + L
Sbjct: 60 IIFQVHWFGFFLHCSNRIVLHTIDLHNYLILDYCDMPASTTRCFVLRVQYVFGL 113
>U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical
protein F07F6.2 protein.
Length = 261
Score = 32.7 bits (71), Expect = 0.055
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 69 ETGRHHNIFSLREEFVIYHNELILYHQNLILL 164
ET R + S RE F+ Y L+LY QNL+LL
Sbjct: 110 ETSRKYIAISTREMFMYYVELLLLYFQNLLLL 141
>U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 20 protein.
Length = 330
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/54 (20%), Positives = 29/54 (53%)
Frame = +1
Query: 10 LLVPFYWYGYVLHLENYVVLRPVDITTYSAYEKSS*FIITNSYFIIRT*YCYAL 171
++ + +G+ +H + ++L +D+ Y+ ++ + T FI+RT Y + +
Sbjct: 60 IIFQVHLFGFFVHFFSRIILHGLDLYNYAVFDYCNMPASTIRCFILRTQYVFGM 113
>Z72515-3|CAA96683.2| 330|Caenorhabditis elegans Hypothetical
protein T11A5.3 protein.
Length = 330
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/54 (20%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 YYLLVPFYWYGYVLHLENYVVLRPVDITTYSAYEKSS*FIITNSY--FIIRT*Y 159
+ +++ + +G++LH ++L +D+ Y+ + ++ N Y F++R Y
Sbjct: 56 FKIIIQLHLFGFMLHCSGRIILHSIDLFNYTTQDNPC-DMVPNIYRCFVLRLMY 108
>Z83233-2|CAB05761.1| 338|Caenorhabditis elegans Hypothetical
protein K06B4.2 protein.
Length = 338
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 311 SNRNYSKRNSERYTKKRIENFKVLVKCSKC 222
+ +NY+K +Y KK E+F +L KC C
Sbjct: 30 ATKNYAKFTC-KYDKKCFESFTILPKCQFC 58
>AF273797-2|AAG15146.1| 338|Caenorhabditis elegans nuclear receptor
NHR-52 protein.
Length = 338
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 311 SNRNYSKRNSERYTKKRIENFKVLVKCSKC 222
+ +NY+K +Y KK E+F +L KC C
Sbjct: 30 ATKNYAKFTC-KYDKKCFESFTILPKCQFC 58
>U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein.
Length = 359
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 262 ELKILKCS*NVLSANTVLTFNSIEFYSTRTPV 167
E+ I K +L+ TF+ I FYS PV
Sbjct: 256 EMSIQKVMSGILAIRAAFTFDPITFYSCENPV 287
>AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 474
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 262 ELKILKCS*NVLSANTVLTFNSIEFYSTRTPV 167
E+ I K +L+ TF+ I FYS PV
Sbjct: 371 EMSIQKVMSGILAIRAAFTFDPITFYSCENPV 402
>AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 453
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 262 ELKILKCS*NVLSANTVLTFNSIEFYSTRTPV 167
E+ I K +L+ TF+ I FYS PV
Sbjct: 367 EMSIQKVMSGILAIRAAFTFDPITFYSCENPV 398
>AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 2 protein.
Length = 359
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 262 ELKILKCS*NVLSANTVLTFNSIEFYSTRTPV 167
E+ I K +L+ TF+ I FYS PV
Sbjct: 256 EMSIQKVMSGILAIRAAFTFDPITFYSCENPV 287
>AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical
protein Y57E12B.3 protein.
Length = 684
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 63 GFETGRHHNIFSLREEFVIY 122
GF+ R+HN F +R +FV++
Sbjct: 66 GFKLFRNHNHFCIRRQFVLH 85
>U88178-7|ABA03111.1| 439|Caenorhabditis elegans Hypothetical
protein W09C3.1 protein.
Length = 439
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 195 IELKVNTVLALRTFHEHFKIFNSLLRVPFAV 287
I + + T+LA++T HE+ I L FAV
Sbjct: 130 IRVCIRTLLAIKTMHEYTYIHRDLKPCNFAV 160
>U00044-6|AAA50679.2| 670|Caenorhabditis elegans Bard homolog
(tumor suppressorgene bard1) protein 1 protein.
Length = 670
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 272 TKKRIENFKVLVKCSKC 222
TKK +E F+ ++C KC
Sbjct: 5 TKKALETFRTAIECVKC 21
>AL023856-3|CAA19562.2| 335|Caenorhabditis elegans Hypothetical
protein Y94A7B.6 protein.
Length = 335
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = +3
Query: 135 ILYHQNLILLRTGVRVE*NSIELKVNTVLALRTFHEHFKIFNSLLRVPFAVSLRVV 302
+L +++ +RV+ N + T ++ TFH+H ++F L + A+ + ++
Sbjct: 202 VLVLVEIVVFVVVIRVKMNRATKDIQTSISRDTFHKH-RMFIRALNLKIAIPIAII 256
>AC006676-2|AAK71382.3| 439|Caenorhabditis elegans Hypothetical
protein M04F3.3 protein.
Length = 439
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 195 IELKVNTVLALRTFHEHFKIFNSLLRVPFAV 287
I + + T+LA++T HE+ I L FAV
Sbjct: 130 IRVCIRTLLAIKTMHEYTYIHRDLKPCNFAV 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,161,957
Number of Sequences: 27780
Number of extensions: 103073
Number of successful extensions: 281
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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