Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l02
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical ...    29   1.9  
U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical p...    27   5.8  
Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical p...    27   7.6  

>AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical
           protein M151.3 protein.
          Length = 836

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 237 DLKSLCLT-KNIAYFTERYNAPTVLKAQPAVY-DAFIKHSELFINAICQMDEKQQCE*FL 64
           D+  LC    + A   + Y      K  P  Y DAF++HSE  +NA+ + +++Q     +
Sbjct: 19  DVSQLCFNLTHCATSYKHYAFQLASKIAPKRYNDAFLEHSEEHLNALRKQNQQQLSTEEI 78

Query: 63  FRRISKIKTD 34
           F     I T+
Sbjct: 79  FTSCRNIFTE 88


>U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical
           protein EEED8.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -1

Query: 303 DAPKSEKLEFVYNCSDLDINEEDLKSLCLTKNIAY 199
           DAPKS +LE V   SDL   +++LKSL L     Y
Sbjct: 25  DAPKSPELEEVSTVSDL---QDELKSLRLENKDLY 56


>Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical
           protein C08H9.5 protein.
          Length = 502

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -1

Query: 300 APKSEKLEFVYNCSDLDINEEDL 232
           AP +EK+ +++  ++++INEEDL
Sbjct: 151 APINEKIMYLHYYAEVEINEEDL 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,395,496
Number of Sequences: 27780
Number of extensions: 201870
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)