Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l02
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              25   0.34 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   9.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 363 CIAADIKGQVEQLELVNQYLDAPKSEKLEFVYNCSDLDINEEDLKS 226
           CI  + K  +E +E   +Y + P+ EKL+  +NC     N  D K+
Sbjct: 43  CIG-ETKTTIEDVE-ATEYGEFPEDEKLKCYFNCVLEKFNVMDKKN 86


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 25  LIAISFNFTNSSKQKLFTLLFFIHLTYG-VYK*FAVFYECIVNRWL 159
           L  +   + +++     T L F     G V   F+  YE + NRWL
Sbjct: 68  LAVVRERYLHTATNYFVTSLAFADCLVGLVVMPFSAIYEVLENRWL 113


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 22  GLIAISFNFTNSSKQKLFTLLFFIHLTYGVY 114
           G   + ++F NS   ++   LF+ +  YG +
Sbjct: 205 GFALLVYDFRNSRSWRITNNLFYPYPPYGTF 235


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 206 IFLVKHRDFKSSSFISKSEQL 268
           + ++KHR+F+SS  I  S++L
Sbjct: 654 LMMLKHREFRSS--IKASDKL 672


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 342 GQVEQLELVNQYLDAPKSEKLEFVYNCSDLDINEE 238
           GQV  L +    L    S  +E  Y+C   D +EE
Sbjct: 168 GQVFMLCIFGNRLIEESSSVMEAAYSCHWYDGSEE 202


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 101 HMAFINNSLC 130
           +M F+NNS+C
Sbjct: 625 NMGFLNNSMC 634


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,275
Number of Sequences: 438
Number of extensions: 2570
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)