Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10l01
(195 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 23 0.33
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 23 0.44
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 0.58
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 22 0.58
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 1.3
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 21 1.8
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 21 1.8
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 21 1.8
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 20 2.3
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 19 7.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 19 7.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 19 7.1
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 18 9.4
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 23.0 bits (47), Expect = 0.33
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 176 NIELIKHKNLLQNEYTTLQSYKC 108
N+E ++ NLL++ Y TL SY C
Sbjct: 111 NVEAEENYNLLEDIYETL-SYDC 132
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 22.6 bits (46), Expect = 0.44
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -3
Query: 160 NTKIYYKTSTQHYNH 116
+++I+Y TS Q+Y H
Sbjct: 199 SSEIFYTTSQQYYGH 213
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 0.58
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 191 VLSNKNIELIKHKNLLQNEYTT 126
VL ++ L H NLL N Y+T
Sbjct: 390 VLDLEDNALASHNNLLNNVYST 411
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 22.2 bits (45), Expect = 0.58
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 122 VMLCTRFVINFCV*SIQYFYLI-KP 193
V+ CT ++N C+ S+ F I KP
Sbjct: 122 VLSCTASILNLCMISVDRFCAITKP 146
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.0 bits (42), Expect = 1.3
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 122 VMLCTRFVINFCV*SI-QYFYLIKP 193
V +CT ++N C S+ +Y + +P
Sbjct: 146 VWMCTASILNLCAISLDRYLAVTRP 170
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 20.6 bits (41), Expect = 1.8
Identities = 6/22 (27%), Positives = 13/22 (59%)
Frame = +2
Query: 122 VMLCTRFVINFCV*SIQYFYLI 187
V+ CT ++N C ++ ++ I
Sbjct: 117 VLCCTASILNLCAIALDRYWAI 138
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 20.6 bits (41), Expect = 1.8
Identities = 6/22 (27%), Positives = 13/22 (59%)
Frame = +2
Query: 122 VMLCTRFVINFCV*SIQYFYLI 187
V+ CT ++N C ++ ++ I
Sbjct: 117 VLCCTASILNLCAIALDRYWAI 138
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 20.6 bits (41), Expect = 1.8
Identities = 6/22 (27%), Positives = 13/22 (59%)
Frame = +2
Query: 122 VMLCTRFVINFCV*SIQYFYLI 187
V+ CT ++N C ++ ++ I
Sbjct: 117 VLCCTASILNLCAIALDRYWAI 138
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 20.2 bits (40), Expect = 2.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 157 TKIYYKTSTQHYN 119
TKI + S QHYN
Sbjct: 60 TKIDFGLSIQHYN 72
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 18.6 bits (36), Expect = 7.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 151 FLCLINSIFLFD 186
F CL ++IFL D
Sbjct: 124 FNCLSDTIFLID 135
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 18.6 bits (36), Expect = 7.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 151 FLCLINSIFLFD 186
F CL ++IFL D
Sbjct: 124 FNCLSDTIFLID 135
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 18.6 bits (36), Expect = 7.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 151 FLCLINSIFLFD 186
F CL ++IFL D
Sbjct: 124 FNCLSDTIFLID 135
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 18.2 bits (35), Expect = 9.4
Identities = 7/26 (26%), Positives = 12/26 (46%)
Frame = -2
Query: 185 SNKNIELIKHKNLLQNEYTTLQSYKC 108
+ +N+ + KN+ L SY C
Sbjct: 671 NQRNMYKLDLKNMKYTRSADLSSYNC 696
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,070
Number of Sequences: 438
Number of extensions: 428
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used: 2541420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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