Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k22
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    30   0.39 
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    29   0.69 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   1.6  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    28   2.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    28   2.1  
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    28   2.1  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   3.7  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   6.4  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    26   6.4  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   8.5  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 660 NGRLNMNLDTVQFSPDACECSSGYEKMLFRQTALART 550
           N   ++ + T QF+ D  E +S + + +FRQ+ L RT
Sbjct: 391 NDEFDLTMRTPQFNYDGVENTSSFVERIFRQSGLQRT 427


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 420 LNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLENTD 250
           + +N NY+      K   +GE    S    N    + N+P I  DL ++   LEN D
Sbjct: 135 IENNPNYSNKPSKLKRALSGENSVFSIHQRNTLSPSSNLPRIPSDLYDIKQFLENLD 191


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/85 (21%), Positives = 30/85 (35%)
 Frame = +3

Query: 558 PAPFGEIAFFHSRSNIRTRPAKIAPCPNSYSADHCCIDKASAFPYRPPSLCTCSRMLETR 737
           P  F ++ + H    ++     I      Y  D   I K S  PY P +    +  +   
Sbjct: 690 PESFSKLLYSHIEPMLKVSITPIGSFRRPYPLDTTLIVKPSGQPYAPSTSRERNNNISEL 749

Query: 738 QNLRLRRKCEASPVRDRILSSPEPV 812
            N R + + +  P      S  EP+
Sbjct: 750 SNSRTKHRAKDDPKGSFCFSVDEPM 774


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 663 CIDKASAFPYRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRILS 797
           C+     +P      C  +  LET   +RLR K      +DRI+S
Sbjct: 508 CLRDRLIYPLTSSEFCDVANSLETLAIIRLRTKQRNGKPQDRIIS 552


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 747  GDFVVSQACVSTYRDLVDDTGT--PRPYLCNNGRLNMNL 637
            G F +++AC     D + +TGT  P PYL  +G  ++ L
Sbjct: 1969 GIFFITKACGILLLDSISNTGTIMPTPYLDIHGETDLQL 2007


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = -1

Query: 378 KDQANGELQKLSAMLLNYKK-SNKNVPNIKFDLKNLSFMLENTDK---IDIIQFDDVKNY 211
           K   N +L+ ++A      + + KNV  +K +L+NLS  L+N ++    + I  +D+K  
Sbjct: 84  KIDLNSQLKAINAFEAKASEGAKKNVELVKAELQNLSATLKNIEQARPTEEITIEDMKQA 143

Query: 210 VQPAIVNLFES 178
           V P I  + E+
Sbjct: 144 V-PEIEKIVET 153


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = -1

Query: 849 DGFCNATNALLNAQAPDLI----ECDPALGLLHIFSAGGDFVVSQACVSTYRDLVDDT 688
           DG     +  L+A  P  +      D  LG+       G  V  QACVS YR  ++ T
Sbjct: 551 DGLYYIIDGFLDATCPSKLTFSTSYDTDLGMHSFMIKPGGIVNYQACVSNYRSFINVT 608


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = -1

Query: 519 NLYRRVYN*NVRDSVNMRKYALLQKMIINELLFLNDNVNYATNKLFSKDQANGELQKLSA 340
           +LY    N N+R+  N   Y +  + ++ E+        + TN     +  +  L+KL  
Sbjct: 42  SLYPFESNINIRNIKNEESYDIPNEYLVGEI--------FPTNSKVIVESFSSPLKKLDG 93

Query: 339 MLLNYKKSN 313
            ++N+K+ N
Sbjct: 94  TMINFKEKN 102


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -1

Query: 357 LQKLSAMLLNYKKS--NKNVPNIKFDLKNLSFMLENTDKIDIIQFDDVKNYVQ 205
           L+K S ++LN      + N+P+IKFD + + + ++    + + + D +K + Q
Sbjct: 723 LRKSSNLILNLFSLMVDANIPDIKFDKEKVVYKVKERFCLQMSESDAIKYFEQ 775


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 273  TNFLGRI*YLARFCWTFCNLTTSPTVFVTRR*LDLC*TVYWW 398
            +NF  R+  L  FCW    L T   VFV    L L   +Y W
Sbjct: 955  SNFYKRLIALLLFCWICSTLVTVLLVFVP---LSLGRAIYAW 993


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,660,225
Number of Sequences: 5004
Number of extensions: 75448
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)