Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k22
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942 30 2.2
04_04_1553 - 34363848-34366058,34369087-34370451 30 2.9
07_01_0005 + 41687-43405 29 3.9
01_06_0029 + 25751750-25752077,25753501-25753622,25754344-257545... 29 3.9
05_07_0230 - 28540114-28540323,28540414-28540548,28540779-285409... 29 5.1
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247... 29 5.1
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 6.7
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 29 6.7
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435... 29 6.7
02_05_0551 + 29907768-29907909,29907995-29909280 28 8.9
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 28 8.9
01_07_0195 + 41907183-41907306,41907427-41907974 28 8.9
>01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942
Length = 1020
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = -1
Query: 363 GELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLE 259
G+L+KL + L+Y N ++P F+L++LS+ L+
Sbjct: 428 GDLKKLFVLDLSYNHLNGSIPKEIFELQSLSWFLD 462
>04_04_1553 - 34363848-34366058,34369087-34370451
Length = 1191
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = -1
Query: 438 INELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNL 274
I EL +L+ N + L D+A G L KL+ + L+Y N N+P++ L++L
Sbjct: 686 IPELRWLSLQENQLSGSL---DKALGNLSKLTLIDLSYNMFNGNIPDVFGKLRSL 737
>07_01_0005 + 41687-43405
Length = 572
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 522 PSDSECTRGSCEPAPFGEIAFFHSRSNIRTRPAKIAPCPNSYSAD 656
P+ + + SC P+P AFF + I I PC +S+ AD
Sbjct: 122 PNCATISASSCGPSPGQSAAFFVALYLIALGTGGIKPCVSSFGAD 166
>01_06_0029 +
25751750-25752077,25753501-25753622,25754344-25754540,
25754641-25754815,25755126-25755260,25755374-25755583
Length = 388
Score = 29.5 bits (63), Expect = 3.9
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Frame = -1
Query: 744 DFVVSQACVSTYRDLVDDTGT---PRPYLCNNGRLNMNLDTVQFSPDACE---CSSGYEK 583
DF V++ S D+ +TGT P + N N D F E C Y
Sbjct: 247 DFGVARIEASNPSDMTGETGTLGYMAPEVLNGHPYNRKCDVYSFGICLWEIYCCDMPYPD 306
Query: 582 MLFRQ--TALART-----IPVCIPNRLANLYRRVYN*N 490
+ F + +A+ R IP C P+ LAN+ +R ++ N
Sbjct: 307 LSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDAN 344
>05_07_0230 -
28540114-28540323,28540414-28540548,28540779-28540953,
28541104-28541300,28541824-28541945,28542887-28543193
Length = 381
Score = 29.1 bits (62), Expect = 5.1
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Frame = -1
Query: 744 DFVVSQACVSTYRDLVDDTGT---PRPYLCNNGRLNMNLDTVQFSPDACE---CSSGYEK 583
DF V++ S D+ +TGT P + N N D F E C Y
Sbjct: 240 DFGVARLEASNPSDMTGETGTLGYMAPEVLNGSPYNRKCDVYSFGICLWEIYCCDMPYPD 299
Query: 582 MLFRQ--TALART-----IPVCIPNRLANLYRRVYN*N 490
+ F + +A+ R +P C P+ LAN+ +R ++ N
Sbjct: 300 LSFSEVTSAVVRQNLRPEMPRCCPSSLANVMKRCWDAN 337
>05_04_0312 -
20123892-20124085,20124183-20124508,20124728-20124732,
20125063-20125670,20125744-20125884,20126067-20126194,
20126288-20126329,20126613-20126755
Length = 528
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 702 SLCTCSRMLETRQNLRLRRKCEASPVRD 785
SLC C+ R R+RR+CE RD
Sbjct: 18 SLCVCACSCFLRDGGRMRRRCEGGSARD 45
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Frame = +3
Query: 690 YRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRIL------SSPEPVRLAKRWWRYKNHP 851
Y P L + RQ L + CE + +RD+ + + PE AK+W K
Sbjct: 1060 YVPKPLSKELQQQNLRQILPSEKSCEENKIRDKEIVERSTGAKPETAPEAKKWEGKKTSK 1119
Query: 852 GRSTRLQRWKSRS 890
G W+ R+
Sbjct: 1120 GHGKSHPSWRRRN 1132
>11_06_0768 + 27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 798 SPEPVRLAKRWWRYKNHPGRSTRLQ 872
SPEP + KR + +K H G +RL+
Sbjct: 1013 SPEPDKQVKRQFEFKTHDGSDSRLE 1037
>05_05_0080 -
22243175-22243226,22243342-22243389,22243485-22243540,
22243752-22243819,22244712-22244773,22245166-22245214,
22245818-22245899,22245987-22246064,22246441-22246499,
22246727-22246805,22246946-22247218
Length = 301
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 615 PAKIAPCPNSYSADHCCIDKASAFPYRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRIL 794
P + PC + H +S+ P P+L T +R T LRL ++ +P+
Sbjct: 15 PLRRGPCAPRRQSAHASSSSSSSLP--SPALATSTRFAATAPILRLVQRRPRAPLTAARA 72
Query: 795 SSPE 806
+SP+
Sbjct: 73 ASPD 76
>02_05_0551 + 29907768-29907909,29907995-29909280
Length = 475
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 87 QCR*CLAPDFHC-RFPVACSVRSSSYSTIDCA 179
QC+ C +P + R P+ RSSSYS + CA
Sbjct: 169 QCKPCPSPPCYSQRDPLFDPTRSSSYSAVPCA 200
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 28.3 bits (60), Expect = 8.9
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = -1
Query: 420 LNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLENTDKID 241
LN +++ N+L K A K+ +LL K+ K + D + L TDK D
Sbjct: 627 LNRKMDFVENEL--KRAAELNESKIQKILLEKKQLQKEKEVLVEDRQKLE-----TDKAD 679
Query: 240 IIQFDDVKNYVQPAIVNLFESHNRSLNN 157
I + D N + ++ E++NR NN
Sbjct: 680 IRRDIDSLNTLSKSLKERREAYNRDRNN 707
>01_07_0195 + 41907183-41907306,41907427-41907974
Length = 223
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 393 NKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLENTDKI 244
NKLF++ GE+ L++++K+N N P F + L+ L T I
Sbjct: 137 NKLFTRTVCKGEVFVFPRGLVHFQKNNGNTP--AFAIAALNSQLPGTQSI 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,101,157
Number of Sequences: 37544
Number of extensions: 507246
Number of successful extensions: 1371
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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