Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k21
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652 34 0.12
12_02_1102 + 26088927-26090321 31 0.82
06_03_0178 + 17594062-17595576 31 1.1
03_03_0219 - 15519076-15520050,15520376-15520579,15520755-155207... 31 1.4
02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523 31 1.4
02_03_0288 - 17328805-17328828,17328888-17328989,17329069-173292... 29 4.4
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 29 5.8
05_03_0416 + 13684604-13688050 29 5.8
05_01_0257 + 1967471-1967695,1968571-1969395 29 5.8
01_07_0233 + 42191465-42191953,42191976-42192272,42192310-42192690 29 5.8
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622 29 5.8
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 29 5.8
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 28 7.6
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 7.6
>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
Length = 717
Score = 34.3 bits (75), Expect = 0.12
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = -3
Query: 742 RGADVRKRFAENEH*ADACAYQQDKQYAARPDSFRGQGGRAFDWQSHEQFCFFNIFVGRH 563
+GA+ R R+ N + + + QQ + A RP GQG R D Q ++ C FN F RH
Sbjct: 441 QGANQRVRYT-NPYLGGSSSQQQQPRSAPRPQFMPGQGRR--DVQGQQRLC-FNCFESRH 496
>12_02_1102 + 26088927-26090321
Length = 464
Score = 31.5 bits (68), Expect = 0.82
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -3
Query: 727 RKRFAENEH*ADACAYQQDKQYAARPDSFRGQGGRAFDWQSHEQFCFFNIFVGRHVFADA 548
R RF A +C++ +Y A + G G A DW ++ F + + GR FA A
Sbjct: 288 RPRFVAEPVDARSCSFVGTHEYVAPEVASGGAHGAAVDWWAYGVF-LYELIYGRTPFAGA 346
Query: 547 VHQS 536
+++
Sbjct: 347 TNEA 350
>06_03_0178 + 17594062-17595576
Length = 504
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 401 GFRPSATQPITTVGKMPAVGRLLPNKKAIS*PPW 300
G PSAT P T + P++G P+ + S PPW
Sbjct: 471 GTTPSATTPKTRFSRDPSLGSRSPSTRQGSTPPW 504
>03_03_0219 -
15519076-15520050,15520376-15520579,15520755-15520791,
15522025-15522104
Length = 431
Score = 30.7 bits (66), Expect = 1.4
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Frame = -1
Query: 807 HNVRAKYTEGDTATKGDLMHIQEELMYEN-----DLLKMNIELMHAHINKINNML-HDLI 646
HNV +T G +KG L + EL N D+ N E MH + +I+ +L D
Sbjct: 216 HNVNNTFTVGPLLSKGTLDTV-PELQGSNETNVTDVGAQNTECMHENTEEIDALLCSDSD 274
Query: 645 VSVAKVDERLIGNLMNNSVSSTFLSDDTFLLMPCTNPPAHTSNCYNNSIYKEGRWVANTD 466
KV E +NN V + +DT + + A R V +T
Sbjct: 275 EGCLKVQE------LNNRVRKYPMQNDTMSVESVASAGASQPAKKRRLSSGTDRSVVDTA 328
Query: 465 SSQCIDFS-NYKELAIDDDVE 406
SS D S + K L+ DDD +
Sbjct: 329 SSARPDHSVDQKHLSHDDDAQ 349
>02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523
Length = 973
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 723 NDLLKMNIELMHAHINKINNMLH-DLIVSVAKVDERLIGNLMNNSVSSTFLSDDTFLL 553
N +L +++ L + H ++ +LH DL S +DE L +L + ++ L DDT ++
Sbjct: 768 NIMLDVSMALEYLHHRHVDVVLHCDLKPSNVLLDEELTAHLADFGIAKLLLGDDTSVI 825
>02_03_0288 -
17328805-17328828,17328888-17328989,17329069-17329239,
17329471-17329572,17331257-17331387,17335329-17335460,
17335616-17335792,17335897-17336077
Length = 339
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 232 QFAFSHGSDVVQTGADAAKLGVLH--GGYEIAFLLGNKRPTAGIFP-TVVIGCVAD 390
++ HG+D + D L VLH G E+A L G ++ +FP T I CV D
Sbjct: 137 RYLLDHGADTEKLNNDG--LTVLHFASGEEVAALCGARKDVETLFPVTSRIPCVHD 190
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/47 (21%), Positives = 29/47 (61%)
Frame = +1
Query: 616 QTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 756
QT ++GH N +Q +++ ++ + + +++++ ++LLN+H+
Sbjct: 174 QTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHK 220
>05_03_0416 + 13684604-13688050
Length = 1148
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 525 TSNCYNNSIYKEGRWVANTDSSQCIDFSNYKEL 427
T N YN I +WV + D+ +C+D EL
Sbjct: 619 TLNLYNTKITMLPQWVTSIDTLECLDLGYCHEL 651
>05_01_0257 + 1967471-1967695,1968571-1969395
Length = 349
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 522 SNCYNNSIYKEGRWVANTDSSQCIDFSNYKELAIDDDVEF 403
+N N ++K WV TD D + Y++ A DV+F
Sbjct: 280 NNLQNRVLFKSD-WVLRTDGDAAADLAEYRDNATKWDVDF 318
>01_07_0233 + 42191465-42191953,42191976-42192272,42192310-42192690
Length = 388
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Frame = -1
Query: 456 CIDFSNYKELAI----DDDVEFWIP 394
C+D NY EL I DDD EF++P
Sbjct: 356 CVDTENYSELEIALDTDDDEEFFLP 380
>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
Length = 288
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 459 ATSPCWPPNALLCKCCCCS 515
A SP W P C+ CCC+
Sbjct: 231 ACSPAWTPRRPRCRRCCCA 249
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/47 (21%), Positives = 29/47 (61%)
Frame = +1
Query: 616 QTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 756
QT ++GH N +Q +++ ++ + + +++++ ++LLN+H+
Sbjct: 174 QTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHK 220
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -1
Query: 705 NIELMHAHINKINNMLHDLIVSVAKVDERLIGNLMNNSVSSTFLSDDTFLLM 550
NI LM+ N+L +LI V DE+++G+ + +S T D + L+
Sbjct: 817 NISLMYLR----RNLLEELISEVDTFDEKVLGSFVRIRISGTGQRQDIYRLV 864
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 331 PTKKQSHNHHGEHQVWRRRH 272
P + QSH+HH H R+RH
Sbjct: 163 PQQPQSHHHHHHHSGSRKRH 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,968,082
Number of Sequences: 37544
Number of extensions: 421590
Number of successful extensions: 1375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -