Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k21
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   7.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   7.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.7  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 558 LLMPCTNPPAHTSNCYNNSIYKEGRWVANTDSSQCIDFSNYKEL 427
           ++   +N   H +N YNN+ Y       N ++    +++NYK+L
Sbjct: 314 IISSLSNKTIHNNNNYNNNNYNN-----NYNNYNNNNYNNYKKL 352


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 552 MPCTNPPAHTSNCYNNSI 499
           MPCT PP+   N   N +
Sbjct: 312 MPCTQPPSAPQNLTVNFV 329


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = +3

Query: 507 CCSNYWCVPADWCTASAKTCRPTKMLKKQNCS*DC 611
           CC         W T  ++ C  +   K++N S  C
Sbjct: 344 CCKTRIIGRRSWVTRESQICNNSSSDKERNSSFKC 378


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 345 WSFIAQQKSNLITTMENTKFGGVGTSLND 259
           WS+++ +K+N + T+     G   T LN+
Sbjct: 286 WSYMSGEKANEVATILVDDCGCNSTMLNE 314


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 345 WSFIAQQKSNLITTMENTKFGGVGTSLND 259
           WS+++ +K+N + T+     G   T LN+
Sbjct: 286 WSYMSGEKANEVATILVDDCGCNSTMLNE 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,310
Number of Sequences: 438
Number of extensions: 4444
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)