Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k20
         (168 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   3.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   4.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   4.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   7.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          18   9.7  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 36  QSYIQLNNYYESLSFD 83
           ++Y  L + YE+LS+D
Sbjct: 116 ENYNLLEDIYETLSYD 131


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -2

Query: 119 YNIHAYNIQPYSV 81
           YN+  +N  P+S+
Sbjct: 466 YNVELHNSSPFSI 478


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -2

Query: 119 YNIHAYNIQPYSV 81
           YN+  +N  P+S+
Sbjct: 504 YNVELHNSSPFSI 516


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 124 ESITSMHIISSP 89
           ESITS++  SSP
Sbjct: 406 ESITSVNSTSSP 417


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/22 (22%), Positives = 14/22 (63%)
 Frame = +3

Query: 87  IGLDIICMDVIDSVSTLIVTMK 152
           +GL +    ++ S + +++T+K
Sbjct: 72  LGLIVPVFTIVSSYAAIVLTLK 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,773
Number of Sequences: 438
Number of extensions: 624
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 35
effective length of database: 131,013
effective search space used:  2620260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)