Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k19
         (187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   1.7  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    24   3.0  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    23   7.0  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    23   7.0  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    22   9.3  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    22   9.3  
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    22   9.3  

>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 84  SHISYFPVHHSEHRSRTEACIAQ 152
           S ISY P+ H EH +    C +Q
Sbjct: 134 SDISYVPIPHKEHSNWPVHCSSQ 156


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 37  ILFY*TVSRRFPKVSIATFPISQSITRNIDL 129
           +LF  ++ R  PK  I   P++ S +RN+ L
Sbjct: 1   MLFSRSILRGMPKAGIPKSPLALSASRNLRL 31


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 51  NSKQTISKSFHSHISYFPVHHSEH 122
           NSK     SF +HIS   + HS++
Sbjct: 739 NSKALTKDSFSTHISVSSLLHSDN 762


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 138 LPFEIYVPSDGLGNRKCGYGNFW 70
           +PF+++   DG G    G G  W
Sbjct: 156 VPFKLFDNGDGKGTIAGGQGTMW 178


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 36  NSILLNSKQTISKSFHSHISYFPVHHSEHRSRTEACI 146
           NS++ +   T + +F +  +  PVH ++ R R  A +
Sbjct: 380 NSLINDRSSTTTPTFVNSEASSPVHKNKRRRRIYAAL 416


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 107 DWEIGNVAMETFG 69
           DW+ G ++ ETFG
Sbjct: 913 DWDDGPISAETFG 925


>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 121

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 143 TCFRSRSMFRVMDWEIGNVAMETFGNRLLTV**NRII---NLFTCID 12
           T +  ++ FR+++WEI        GN LL     R+I   N F C D
Sbjct: 66  THYYLKNCFRILEWEI---VSHVGGNELLIN--RRVIDVNNFFICQD 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,695
Number of Sequences: 5004
Number of extensions: 13203
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)