Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k19
         (187 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine re...    29   0.58 
Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical p...    25   5.4  
AF067937-4|AAF99911.2|  352|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 40 protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -2

Query: 159 DFIVLYMLPFEIYVPSD----GLGNRKCGYGNFWKS 64
           DF+  Y   FEIYVP +    G    KC Y  FW +
Sbjct: 140 DFVFFYCCDFEIYVPKNCLALGCVMNKC-YKTFWST 174


>Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical
           protein F09A5.2 protein.
          Length = 894

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 15  DTRK*IYNSILLNSKQTISKSFHSHISYFPVHHSEHRSRTEACIAQ*NPSG 167
           DT+K + N +L   K   S+S+   + +   +HSE+ +  E CI    PSG
Sbjct: 296 DTQKNVEN-VLAGCKYMNSRSYCEIVDWS--YHSENPNEFEICIPDSQPSG 343


>Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical
           protein F49E12.6 protein.
          Length = 600

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 70  PKVSIATFPISQSITRNIDLERKHV*HN 153
           P VS  TFP   S   N+D++ KH+  N
Sbjct: 529 PLVSQMTFPQESSQLHNLDVKPKHLMSN 556


>AF067937-4|AAF99911.2|  352|Caenorhabditis elegans Hypothetical
           protein F22F7.6 protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = +3

Query: 48  LNSKQTISKSFHSHISYFPV-HHSEH 122
           L      SK+F  H  +FP  HH EH
Sbjct: 202 LKQSMAYSKTFEFHHRFFPQGHHIEH 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,337,179
Number of Sequences: 27780
Number of extensions: 71436
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)