Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k16
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 98 7e-21
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 97 2e-20
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 91 1e-18
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715... 32 0.66
02_05_0461 - 29242711-29242864,29242992-29243059,29243500-292435... 29 4.7
02_04_0430 + 22834405-22834839 29 4.7
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922... 29 6.2
04_04_0089 - 22724971-22725035,22725403-22725466,22725602-227256... 28 8.2
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 98.3 bits (234), Expect = 7e-21
Identities = 50/116 (43%), Positives = 67/116 (57%)
Frame = -1
Query: 841 FQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV 662
F+ I P WED GG+W S + + D WL +L +IGE F+ DEICGAVV
Sbjct: 112 FKNKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQFDYGDEICGAVV 167
Query: 661 NVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 494
+VR K ++IAIWT +A + A I IGK+ KE L IGF VH D + K+ ++
Sbjct: 168 SVRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHWDILSKYEDMSE 223
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 97.1 bits (231), Expect = 2e-20
Identities = 42/109 (38%), Positives = 65/109 (59%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICG 671
+ +F+ G+ P WED GG+W + +K T L+ WL+ ++ LIGE F+ S+EICG
Sbjct: 87 FHLFKAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMALIGEQFDESEEICG 143
Query: 670 AVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRD 524
V +VR + DK+A+WT A + + IGKK KE + + K+ + H D
Sbjct: 144 VVASVRQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFHDD 192
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 90.6 bits (215), Expect = 1e-18
Identities = 41/121 (33%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Frame = -1
Query: 844 VFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAV 665
+F++GIRP+WED AN+ GG+W+I +K T RFW D+VL+L+G+ + SD++CG V
Sbjct: 108 LFKEGIRPLWEDPANRSGGKWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVCGVV 163
Query: 664 VNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI-HGKIGFQVHRDTMVKHSSATKNL 488
++VR D +++W +A A + + +K L + H + D ++ +S+ +N
Sbjct: 164 LSVRFNEDILSVWNRNASDHQAVMTLRDSIKRHLKLPHSYLMEYKPHDASLRDNSSYRNT 223
Query: 487 Y 485
+
Sbjct: 224 W 224
>04_01_0556 -
7156851-7157096,7157288-7157530,7158112-7158153,
7158324-7158425,7159209-7159342,7161071-7161131,
7161192-7161284,7161557-7161639,7161984-7162239
Length = 419
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 640 KIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 494
++A WT A+K + G L G+ VHR VKH +A+K
Sbjct: 180 RVAFWTHQALKPLKQADKGSGLYAVYGLCKSYSISVHRPFHVKHPNASK 228
>02_05_0461 -
29242711-29242864,29242992-29243059,29243500-29243589,
29244026-29244733
Length = 339
Score = 29.1 bits (62), Expect = 4.7
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Frame = -1
Query: 778 ISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV-NVRPKV----DKIAIWTADA 614
IS+ KK F D RF+ D + + E + + G + N+ K+ KI + +
Sbjct: 218 ISMYKKMWFPD--RFYKDYLKAMFNNRKERMELLQGLITSNMDAKIPTFQQKIMLIWGEE 275
Query: 613 MKQHATIEIGKKLKEQLG----IHG--KIGFQVH 530
K IE+ KK+KEQLG +HG K G +H
Sbjct: 276 DKIF-DIELAKKMKEQLGDGCFLHGIPKAGHLLH 308
>02_04_0430 + 22834405-22834839
Length = 144
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 765 FSRLISHLPPILLASSSHIGRM 830
FSR+ S LPP L + SHIGR+
Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116
>12_02_1228 -
27190983-27191291,27191442-27191675,27191994-27192269,
27192420-27192696,27192985-27193283,27193341-27193454,
27193909-27194118,27194567-27194699,27194941-27195221
Length = 710
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 321 SVKYNFILLL*LRKFSLWDVLNIFYSIKLNYF 416
+V +N IL+ LR FSL +L +F + LNYF
Sbjct: 84 AVVFNRILVFSLRIFSLAAILCVFGILPLNYF 115
>04_04_0089 -
22724971-22725035,22725403-22725466,22725602-22725688,
22726775-22726789,22736269-22736685,22738235-22738473,
22739673-22740223,22740440-22740540
Length = 512
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 50 IKCMLNAYNTKACKHQHEC*TYYTSFLTIIS 142
I + + K+C QHEC +Y S+L +S
Sbjct: 457 ILLFVTSIGAKSCNKQHECHCHYLSYLPPVS 487
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,972,483
Number of Sequences: 37544
Number of extensions: 340099
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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