Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k16
(850 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M15353-1|AAC13647.1| 217|Homo sapiens cap-binding protein protein. 155 3e-37
BC107715-1|AAI07716.1| 217|Homo sapiens eukaryotic translation ... 155 3e-37
BC043226-1|AAH43226.1| 217|Homo sapiens eukaryotic translation ... 155 3e-37
BC035166-1|AAH35166.1| 217|Homo sapiens eukaryotic translation ... 155 3e-37
BC012611-1|AAH12611.1| 217|Homo sapiens eukaryotic translation ... 153 1e-36
AB209519-1|BAD92756.1| 243|Homo sapiens eukaryotic translation ... 92 2e-18
BC021690-1|AAH21690.1| 245|Homo sapiens eukaryotic translation ... 89 1e-17
BC021226-1|AAH21226.1| 245|Homo sapiens eukaryotic translation ... 89 1e-17
BC005874-1|AAH05874.1| 245|Homo sapiens eukaryotic translation ... 89 1e-17
BC005392-1|AAH05392.1| 245|Homo sapiens eukaryotic translation ... 89 1e-17
AF068117-1|AAC19374.1| 245|Homo sapiens eIF4E-like protein 4E-L... 89 1e-17
AF047695-1|AAC18565.1| 245|Homo sapiens cap-binding protein 4EH... 89 1e-17
AC092165-5|AAY24105.1| 245|Homo sapiens unknown protein. 89 1e-17
BC068443-1|AAH68443.1| 118|Homo sapiens eukaryotic translation ... 52 2e-06
BC031289-1|AAH31289.3| 118|Homo sapiens eukaryotic translation ... 52 2e-06
>M15353-1|AAC13647.1| 217|Homo sapiens cap-binding protein protein.
Length = 217
Score = 155 bits (375), Expect = 3e-37
Identities = 72/127 (56%), Positives = 93/127 (73%), Gaps = 3/127 (2%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFEN-SDEIC 674
Y++F+ GI PMWED+ NK GGRWLI+L K+QR +DLDRFWL+ +L LIGE+F++ SD++C
Sbjct: 91 YSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 150
Query: 673 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSA 500
GAVVNVR K DKIAIWT + + A IG+ KE+LG+ K IG+Q H DT K S
Sbjct: 151 GAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGST 210
Query: 499 TKNLYTV 479
TKN + V
Sbjct: 211 TKNRFVV 217
>BC107715-1|AAI07716.1| 217|Homo sapiens eukaryotic translation
initiation factor 4E protein.
Length = 217
Score = 155 bits (375), Expect = 3e-37
Identities = 72/127 (56%), Positives = 93/127 (73%), Gaps = 3/127 (2%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFEN-SDEIC 674
Y++F+ GI PMWED+ NK GGRWLI+L K+QR +DLDRFWL+ +L LIGE+F++ SD++C
Sbjct: 91 YSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 150
Query: 673 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSA 500
GAVVNVR K DKIAIWT + + A IG+ KE+LG+ K IG+Q H DT K S
Sbjct: 151 GAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGST 210
Query: 499 TKNLYTV 479
TKN + V
Sbjct: 211 TKNRFVV 217
>BC043226-1|AAH43226.1| 217|Homo sapiens eukaryotic translation
initiation factor 4E protein.
Length = 217
Score = 155 bits (375), Expect = 3e-37
Identities = 72/127 (56%), Positives = 93/127 (73%), Gaps = 3/127 (2%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFEN-SDEIC 674
Y++F+ GI PMWED+ NK GGRWLI+L K+QR +DLDRFWL+ +L LIGE+F++ SD++C
Sbjct: 91 YSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 150
Query: 673 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSA 500
GAVVNVR K DKIAIWT + + A IG+ KE+LG+ K IG+Q H DT K S
Sbjct: 151 GAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGST 210
Query: 499 TKNLYTV 479
TKN + V
Sbjct: 211 TKNRFVV 217
>BC035166-1|AAH35166.1| 217|Homo sapiens eukaryotic translation
initiation factor 4E protein.
Length = 217
Score = 155 bits (375), Expect = 3e-37
Identities = 72/127 (56%), Positives = 93/127 (73%), Gaps = 3/127 (2%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFEN-SDEIC 674
Y++F+ GI PMWED+ NK GGRWLI+L K+QR +DLDRFWL+ +L LIGE+F++ SD++C
Sbjct: 91 YSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 150
Query: 673 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSA 500
GAVVNVR K DKIAIWT + + A IG+ KE+LG+ K IG+Q H DT K S
Sbjct: 151 GAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGST 210
Query: 499 TKNLYTV 479
TKN + V
Sbjct: 211 TKNRFVV 217
>BC012611-1|AAH12611.1| 217|Homo sapiens eukaryotic translation
initiation factor 4E protein.
Length = 217
Score = 153 bits (370), Expect = 1e-36
Identities = 71/127 (55%), Positives = 93/127 (73%), Gaps = 3/127 (2%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFEN-SDEIC 674
Y++F+ GI PMWED+ NK GGRWLI+L K+QR +DL+RFWL+ +L LIGE+F++ SD++C
Sbjct: 91 YSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLNRFWLETLLCLIGESFDDYSDDVC 150
Query: 673 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSA 500
GAVVNVR K DKIAIWT + + A IG+ KE+LG+ K IG+Q H DT K S
Sbjct: 151 GAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGST 210
Query: 499 TKNLYTV 479
TKN + V
Sbjct: 211 TKNRFVV 217
>AB209519-1|BAD92756.1| 243|Homo sapiens eukaryotic translation
initiation factor 4E member 2 variant protein.
Length = 243
Score = 92.3 bits (219), Expect = 2e-18
Identities = 48/122 (39%), Positives = 75/122 (61%), Gaps = 2/122 (1%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICG 671
+ +F++GI+PMWEDDANK GG+W+I L K R W +++L ++GE F +EICG
Sbjct: 122 FHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA----SRCWENLILAMLGEQFMVGEEICG 177
Query: 670 AVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTMVKHSSAT 497
AVV+VR + D I+IW A Q T I L+ L + + + ++ H D+ +K +S+
Sbjct: 178 AVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDS-IKDNSSF 236
Query: 496 KN 491
+N
Sbjct: 237 RN 238
>BC021690-1|AAH21690.1| 245|Homo sapiens eukaryotic translation
initiation factor 4E family member 2 protein.
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICG 671
+ +F++GI+PMWEDDANK GG+W+I L K R W +++L ++GE F +EICG
Sbjct: 113 FHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA----SRCWENLILAMLGEQFMVGEEICG 168
Query: 670 AVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTM 518
AVV+VR + D I+IW A Q T I L+ L + + + ++ H D++
Sbjct: 169 AVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSI 221
>BC021226-1|AAH21226.1| 245|Homo sapiens eukaryotic translation
initiation factor 4E family member 2 protein.
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICG 671
+ +F++GI+PMWEDDANK GG+W+I L K R W +++L ++GE F +EICG
Sbjct: 113 FHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA----SRCWENLILAMLGEQFMVGEEICG 168
Query: 670 AVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTM 518
AVV+VR + D I+IW A Q T I L+ L + + + ++ H D++
Sbjct: 169 AVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSI 221
>BC005874-1|AAH05874.1| 245|Homo sapiens eukaryotic translation
initiation factor 4E family member 2 protein.
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICG 671
+ +F++GI+PMWEDDANK GG+W+I L K R W +++L ++GE F +EICG
Sbjct: 113 FHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA----SRCWENLILAMLGEQFMVGEEICG 168
Query: 670 AVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTM 518
AVV+VR + D I+IW A Q T I L+ L + + + ++ H D++
Sbjct: 169 AVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSI 221
>BC005392-1|AAH05392.1| 245|Homo sapiens eukaryotic translation
initiation factor 4E family member 2 protein.
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICG 671
+ +F++GI+PMWEDDANK GG+W+I L K R W +++L ++GE F +EICG
Sbjct: 113 FHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA----SRCWENLILAMLGEQFMVGEEICG 168
Query: 670 AVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTM 518
AVV+VR + D I+IW A Q T I L+ L + + + ++ H D++
Sbjct: 169 AVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSI 221
>AF068117-1|AAC19374.1| 245|Homo sapiens eIF4E-like protein 4E-LP
protein.
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICG 671
+ +F++GI+PMWEDDANK GG+W+I L K R W +++L ++GE F +EICG
Sbjct: 113 FHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA----SRCWENLILAMLGEQFMVGEEICG 168
Query: 670 AVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTM 518
AVV+VR + D I+IW A Q T I L+ L + + + ++ H D++
Sbjct: 169 AVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSI 221
>AF047695-1|AAC18565.1| 245|Homo sapiens cap-binding protein 4EHP
protein.
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICG 671
+ +F++GI+PMWEDDANK GG+W+I L K R W +++L ++GE F +EICG
Sbjct: 113 FHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA----SRCWENLILAMLGEQFMVGEEICG 168
Query: 670 AVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTM 518
AVV+VR + D I+IW A Q T I L+ L + + + ++ H D++
Sbjct: 169 AVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSI 221
>AC092165-5|AAY24105.1| 245|Homo sapiens unknown protein.
Length = 245
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICG 671
+ +F++GI+PMWEDDANK GG+W+I L K R W +++L ++GE F +EICG
Sbjct: 113 FHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA----SRCWENLILAMLGEQFMVGEEICG 168
Query: 670 AVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTM 518
AVV+VR + D I+IW A Q T I L+ L + + + ++ H D++
Sbjct: 169 AVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSI 221
>BC068443-1|AAH68443.1| 118|Homo sapiens eukaryotic translation
initiation factor 4E family member 3 protein.
Length = 118
Score = 52.4 bits (120), Expect = 2e-06
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = -1
Query: 826 RPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFEN----SDEICGAVVN 659
RP+WE+++N GG W + + K T W +++L IGE F + DE+ G V+
Sbjct: 6 RPLWEEESNAKGGVWKMKVPKDSTST----VWKELLLATIGEQFTDCAAADDEVIGVSVS 61
Query: 658 VRPKVDKIAIWTADA 614
VR + D + +W +A
Sbjct: 62 VRDREDVVQVWNVNA 76
>BC031289-1|AAH31289.3| 118|Homo sapiens eukaryotic translation
initiation factor 4E family member 3 protein.
Length = 118
Score = 52.4 bits (120), Expect = 2e-06
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = -1
Query: 826 RPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFEN----SDEICGAVVN 659
RP+WE+++N GG W + + K T W +++L IGE F + DE+ G V+
Sbjct: 6 RPLWEEESNAKGGVWKMKVPKDSTST----VWKELLLATIGEQFTDCAAADDEVIGVSVS 61
Query: 658 VRPKVDKIAIWTADA 614
VR + D + +W +A
Sbjct: 62 VRDREDVVQVWNVNA 76
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,847,964
Number of Sequences: 237096
Number of extensions: 1977083
Number of successful extensions: 3020
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2992
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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