Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k16
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 122 4e-28
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 118 5e-27
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 117 9e-27
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 92 5e-19
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 91 7e-19
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 89 3e-18
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 89 3e-18
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 89 3e-18
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 77 2e-14
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 77 2e-14
AL132876-5|CAC48119.1| 576|Caenorhabditis elegans Hypothetical ... 29 3.2
AF045642-12|AAD34648.1| 348|Caenorhabditis elegans Hypothetical... 29 5.5
AF003150-1|AAB54215.1| 997|Caenorhabditis elegans Hypothetical ... 29 5.5
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 28 9.6
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 122 bits (293), Expect = 4e-28
Identities = 54/122 (44%), Positives = 84/122 (68%), Gaps = 3/122 (2%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEIC 674
Y +F++GI+PMWED N GGRWL+ ++K++R LD +WL++++ ++GE F E D IC
Sbjct: 86 YYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFDEYGDYIC 145
Query: 673 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSA 500
GAVVNVR K DK+++WT DA + + IG+ LK++L I + ++VH+D+ + SS
Sbjct: 146 GAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDSSARTSST 205
Query: 499 TK 494
K
Sbjct: 206 VK 207
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 118 bits (284), Expect = 5e-27
Identities = 56/124 (45%), Positives = 85/124 (68%), Gaps = 5/124 (4%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKK-QRFTDL-DRFWLDVVLLLIGENF-ENSDE 680
Y +F++GI+PMWED N GGRWL+ ++K+ QR T L D +WL++++ ++GE F E D
Sbjct: 86 YYLFKEGIKPMWEDVNNVQGGRWLVVVDKQLQRRTQLLDHYWLELLMAIVGEQFDEYGDY 145
Query: 679 ICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHS 506
ICGAVVNVR K DK+++WT DA + + IG+ LK++L I + ++VH+D+ + S
Sbjct: 146 ICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDSSARTS 205
Query: 505 SATK 494
S K
Sbjct: 206 STVK 209
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 117 bits (282), Expect = 9e-27
Identities = 56/125 (44%), Positives = 85/125 (68%), Gaps = 6/125 (4%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKK--QRFTDL-DRFWLDVVLLLIGENF-ENSD 683
Y +F++GI+PMWED N GGRWL+ ++K+ QR T L D +WL++++ ++GE F E D
Sbjct: 86 YYLFKEGIKPMWEDVNNVQGGRWLVVVDKQKLQRRTQLLDHYWLELLMAIVGEQFDEYGD 145
Query: 682 EICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKH 509
ICGAVVNVR K DK+++WT DA + + IG+ LK++L I + ++VH+D+ +
Sbjct: 146 YICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDSSART 205
Query: 508 SSATK 494
SS K
Sbjct: 206 SSTVK 210
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 91.9 bits (218), Expect = 5e-19
Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEIC 674
Y VF+ GI PMWE N+ GGRWLI++EK + +D W ++++ +IGE F ++ + +C
Sbjct: 71 YNVFRDGIEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLC 130
Query: 673 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL 563
G V NVR K KI++WT ++ A + IG LK+ L
Sbjct: 131 GIVCNVRGKGSKISVWTTNSADDGANLRIGGVLKQVL 167
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 91.5 bits (217), Expect = 7e-19
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEIC 674
Y VF+ I+PMWE N GGRWLI ++K + +D WL++++ L+GE F ++ + IC
Sbjct: 66 YNVFRDDIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESIC 125
Query: 673 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL 563
G V NVR K KI++WT D + IG LKE+L
Sbjct: 126 GLVCNVRGKGSKISVWTKDCNDDETNMRIGVVLKEKL 162
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 89.4 bits (212), Expect = 3e-18
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 11/135 (8%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEIC 674
Y VF+ I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + IC
Sbjct: 63 YNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESIC 122
Query: 673 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHGK-----IGFQVHRD 524
G V NVR + KI++WT + + IG LKE+L H K I +Q HR+
Sbjct: 123 GLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHSKPLFDVIHYQTHRN 182
Query: 523 TMVKHSSATKNLYTV 479
+ K +SA K +++
Sbjct: 183 CVKKTTSALKYKFSL 197
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 89.4 bits (212), Expect = 3e-18
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 11/135 (8%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEIC 674
Y VF+ I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + IC
Sbjct: 102 YNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESIC 161
Query: 673 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHGK-----IGFQVHRD 524
G V NVR + KI++WT + + IG LKE+L H K I +Q HR+
Sbjct: 162 GLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHSKPLFDVIHYQTHRN 221
Query: 523 TMVKHSSATKNLYTV 479
+ K +SA K +++
Sbjct: 222 CVKKTTSALKYKFSL 236
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 89.4 bits (212), Expect = 3e-18
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 11/135 (8%)
Frame = -1
Query: 850 YAVFQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEIC 674
Y VF+ I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + IC
Sbjct: 63 YNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESIC 122
Query: 673 GAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHGK-----IGFQVHRD 524
G V NVR + KI++WT + + IG LKE+L H K I +Q HR+
Sbjct: 123 GLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHSKPLFDVIHYQTHRN 182
Query: 523 TMVKHSSATKNLYTV 479
+ K +SA K +++
Sbjct: 183 CVKKTTSALKYKFSL 197
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 77.0 bits (181), Expect = 2e-14
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Frame = -1
Query: 841 FQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV 662
F+ G++P+WED AN GG+W+I L+K R W ++++ +IGE F DE+CGAV
Sbjct: 92 FKTGVKPVWEDPANCKGGKWIIRLKKGLS----TRIWENLLMAIIGEQFLVGDELCGAVC 147
Query: 661 NVRPKVDKIAIWTADAMKQHATIEIGKKLKE--QLGIHGKIGFQVHRDTMVKHSS---AT 497
++R + D I++W +A T I + L+ QL + + ++ H D + SS T
Sbjct: 148 SIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEYKRHDDCLRDQSSYRHTT 207
Query: 496 KNL 488
KN+
Sbjct: 208 KNI 210
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 77.0 bits (181), Expect = 2e-14
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Frame = -1
Query: 841 FQQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV 662
F+ G++P+WED AN GG+W+I L+K R W ++++ +IGE F DE+CGAV
Sbjct: 92 FKTGVKPVWEDPANCKGGKWIIRLKKGLS----TRIWENLLMAIIGEQFLVGDELCGAVC 147
Query: 661 NVRPKVDKIAIWTADAMKQHATIEIGKKLKE--QLGIHGKIGFQVHRDTMVKHSS---AT 497
++R + D I++W +A T I + L+ QL + + ++ H D + SS T
Sbjct: 148 SIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEYKRHDDCLRDQSSYRHTT 207
Query: 496 KNL 488
KN+
Sbjct: 208 KNI 210
>AL132876-5|CAC48119.1| 576|Caenorhabditis elegans Hypothetical
protein Y105E8A.5 protein.
Length = 576
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 457 KICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCRVSLAVLSVFS 585
KI N+ T CI +++ A PL + V+G + C + L F+
Sbjct: 180 KIANSATITCIAKLTKSTAEPLDILVIGTEHCEIFLIDSQAFT 222
>AF045642-12|AAD34648.1| 348|Caenorhabditis elegans Hypothetical
protein C17H12.8 protein.
Length = 348
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 654 LTLTTAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIG 824
LT T S++F F TT Q ++KSV R++ H +L + +H+G
Sbjct: 84 LTRTIVSSRSAKFVHFYIFPNTTTKFQVITKSVNMHSSFRIVVHFERMLNTTVTHLG 140
>AF003150-1|AAB54215.1| 997|Caenorhabditis elegans Hypothetical
protein T05E7.3 protein.
Length = 997
Score = 28.7 bits (61), Expect = 5.5
Identities = 26/93 (27%), Positives = 40/93 (43%)
Frame = -1
Query: 778 ISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHA 599
I+ K RF++ W DV + +F+ D I K+ I T+ ++ H
Sbjct: 736 ITNPKASRFSESSLSWKDVKMSKTVLSFDVFDRI--------EKIVPFHILTS--IETHI 785
Query: 598 TIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSA 500
T+E+ K L E + KIG + V H SA
Sbjct: 786 TVELEKMLIEYISNARKIGVSFNLQNSVTHESA 818
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +3
Query: 675 QISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSH 818
++ E K +KR + K C F + +S +L++SS H
Sbjct: 1345 RLEVEVKKNKGVKRSVVKKELTFADYKNCLFDKTVSRKQQMLISSSKH 1392
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,485,399
Number of Sequences: 27780
Number of extensions: 341762
Number of successful extensions: 767
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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