Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k14
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    31   0.16 
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    31   0.21 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    30   0.36 
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    29   0.63 
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    29   0.83 
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    27   3.3  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   4.4  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    27   4.4  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   5.8  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    26   5.8  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.7  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   7.7  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = +1

Query: 493 LTP*SYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF 672
           L P + ++ R  LL   +L P  T  S++   +A   + N L  C+  K    ++L    
Sbjct: 731 LCPKNSSIIRHALLAKLVLFPENTADSLNEVLAA---YKNTLDLCSQDKRKQSSVLKINL 787

Query: 673 NRLFSSDSTDSLLCPKLGDASVKE 744
           ++LF+  S  SL   +LG   V +
Sbjct: 788 SKLFTLHSCLSLALQRLGYGDVSK 811


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 391 PLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMS 570
           P+  +   L  L+S  A  R   T L +  A G +   +   PR++L V    EP+ + S
Sbjct: 384 PMQKLQQQLQRLVSS-AKERPKATQLSLEGALGKIAVNTVRTPRQLLNVKRPTEPASSNS 442

Query: 571 SID--SGFS 591
           S++  SGFS
Sbjct: 443 SLNNFSGFS 451


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 224  ELPRFSCTPECSW-ICAIRAPLVRTAAPCWGRSSTQSCCRLRIATCHCPL 370
            ++ RFS     SW +   +AP V + + C   S ++SCC LR      P+
Sbjct: 1769 DIDRFSLKMLESWGLFENKAPFVNSTSICTAVSESRSCCHLRYLNGAAPV 1818


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 812 KSCY*SFCSY*FISIWTNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNN 654
           K+ Y  F     IS+W NA++L  L  A+    QS +  ++ E  + N+ +N+
Sbjct: 179 KAAYMIFVEMAEISLWGNAIDLGLLVNATYEQLQSLQGQKAVEESQKNILVND 231


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 432 KVCG--AARHGHITRCAGRVWRFNSIVVYGAQKNAVSAHF 545
           K+CG  A  HGH  R   R+W F   + Y  +K  ++  F
Sbjct: 39  KICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEVF 78


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +1

Query: 535 VPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF---NRLFSSDSTDS 705
           +P  L P   +S+I     +  +W+ +LS  +      R  ++FT     +  + DS  S
Sbjct: 318 LPISLNPDFLISNIHKVSESPRVWVTILSSLSRSCQKFRKKIAFTLFVGKQSKNDDSDFS 377

Query: 706 LLCPKLGDAS 735
            LC +L + S
Sbjct: 378 SLCQRLDEIS 387


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 572  DDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTR 447
            D I + G NK    S+ + T+ +    SPN+ +T+SN   T+
Sbjct: 891  DSIKRLGDNKFEDKSLRICTIPNSIFDSPNSHTTNSNSFFTK 932


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 300 PRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKH 410
           P + ++Q ++HAVD+ S   ++    +G   F  N H
Sbjct: 258 PEILLEQPYDHAVDWWSMGILIFDLLTGSPPFTANNH 294


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 416 KSMFI--VFKGITPTKTVEDNGMLRFEVDSMIVCLIDPN 306
           K+M+I  V + ITP   +++N M  +E + ++  + DPN
Sbjct: 156 KNMYIRSVTRVITPGTLIDENFMNPYESNYILTVVFDPN 194


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -2

Query: 569 DIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFK 414
           D +KE + K   +S+F    ++Y    PNA+    N T      ++D++E +
Sbjct: 64  DSIKEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNSTT---EPSYDLQELR 112


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 607  LNLLSPCAMRKLATRALLSFTFNRLFSSDSTDSLLCPKLGDASVKEFKFNAFVQIEINQY 786
            LN++     +KLA   +L +T  R  SS     L C  + D     FK++   +  I Q+
Sbjct: 905  LNVIGRKIWKKLAE--ILGYTSRRFLSSAEVKWLFCLGMRDGLKPSFKYHPCFEQLIYQF 962

Query: 787  E 789
            +
Sbjct: 963  Q 963


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 493 LTP*SYTVPRKMLLVPTLLEPSLTMSSIDSG 585
           LTP    +P+ ++L+P L+   L  S+I SG
Sbjct: 673 LTPGQLVLPKNLVLLPILILAVLKSSAIRSG 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,458,565
Number of Sequences: 5004
Number of extensions: 72909
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)