Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k13
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    30   0.38 
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    30   0.50 
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   2.7  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    27   4.7  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   6.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.2  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   8.2  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    26   8.2  

>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = +3

Query: 609 CASVLTISNWGVPFLLTNSAVCFTRYLRLPFP---NSTRICSTVVSR*LYGHFISTGIHV 779
           CA+V T SNW   FL++      T  +   +     S  +C+++V+  L+ H  S G+ +
Sbjct: 403 CAAVATTSNWLWNFLISFFTPFITNSIGFKYGYIFASCNLCASIVTF-LFAH-ESKGLTL 460

Query: 780 PSAREKYASGEA--ACKPNELKNMPQSKTV 863
               E Y S       +P  L  M ++K V
Sbjct: 461 EEINELYLSDAKPWMSRPKNLSEMAEAKEV 490


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 220 FYSWYARVLKQNRTLPDCLS*NRYSTHILNVHNLNRF 330
           FY  + + L  N++ P CLS ++ +  ++  +N +RF
Sbjct: 577 FYQSFQKALSMNKSQPSCLSFSKLNDFVVFFNNYSRF 613


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -1

Query: 561 AFTWSNSNKIWWRFLCRATKRSATKNCLRKTTRTWRLPWKTQTASATNAPTSDG--FRSK 388
           A + SN+ + +W  +  A K  ++        RTW   WK++T      PTSDG   RS 
Sbjct: 400 ALSSSNTREKYWDNVLTAHKNDSS-------ARTWN--WKSKTLGQHVLPTSDGTSVRSV 450

Query: 387 CTA 379
           C +
Sbjct: 451 CVS 453


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 744 LYGHFISTG---IHVPSAREKYASGEAACKPNELKNMPQSKTVSTTAL 878
           LY +  S G   IH PS    Y + +   KP +LKN+  S  +   ++
Sbjct: 98  LYQNVSSCGFRDIHRPSKPRHYLAHKVMAKPGKLKNILGSNVIDVNSI 145


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 127 NDAKTLAYFGYYLTHTGTLKTF 62
           ND  T+  + Y LTH+GTL+TF
Sbjct: 314 NDIDTI--YVYILTHSGTLETF 333


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 135  WWLFSKLCNLL 167
            W LFSKLCNLL
Sbjct: 1107 WGLFSKLCNLL 1117


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 181 YFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFCC 56
           Y + +   QSL+  ++F ND   L+ +G+ L     L+ FCC
Sbjct: 522 YNEQMSSAQSLV-DNYFNND-HDLSRYGFLLVSLLRLRQFCC 561


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 765 WK*NVRTITETRPWSRCVSSWGT 697
           WK + RT+ ET PW R +SS  T
Sbjct: 352 WKESTRTVFETVPW-RILSSQAT 373


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 214 NLKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTG 77
           NL  KN  N  Y+D      +    H+ R+ A  LAY     TH G
Sbjct: 116 NLLKKN--NRIYYDERNETFTFKPLHNIRSGAGLLAYLDSQKTHVG 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,789,075
Number of Sequences: 5004
Number of extensions: 81488
Number of successful extensions: 236
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)