Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k13
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386           30   2.1  
06_03_1280 - 28930959-28931540                                         29   4.9  
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690...    29   6.5  
02_01_0601 + 4465775-4465924,4466070-4466531,4466613-4467445,446...    29   6.5  
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152           28   8.6  
06_03_1061 + 27282979-27286854                                         28   8.6  
03_06_0604 - 35006004-35008580                                         28   8.6  

>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
          Length = 1066

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
 Frame = -3

Query: 556 YVVKFKQNLVAVSVPRDETFCNKE--LFTENNAYVAFAVEN----SNCERYQCADKRRLS 395
           +++    N +A S+P +         LF +NN +    +E+    +  E  + ++ +  S
Sbjct: 490 HMLDLSGNNLAGSIPSNTAMLKNVVMLFLQNNEFSGSIIEDIGNLTKLEHLRLSNNQLSS 549

Query: 394 FKMHSCNHNYSGQEIDA---MVDRGIYLDYGHLKCAYCNDFSSNS--REACDSVLKREHT 230
               S  H  S  E+D    +    + +D GHLK  Y  D SSN       DS+ + +  
Sbjct: 550 TVPPSLFHLDSLIELDLSRNLFSGALPVDIGHLKQIYKMDLSSNHFLGSLPDSIGQIQMI 609

Query: 229 NCKSFNLKHKNFDNPTYFDYVKRLQSLLKSHH 134
              + ++   N   P  F  +  LQ+L  SH+
Sbjct: 610 TYLNLSINSFNDSIPNSFGNLTSLQTLDLSHN 641


>06_03_1280 - 28930959-28931540
          Length = 193

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 732 RPWSRCVSSWGTAIASIA*NTPRCWLTRKARPSLKWSKRMRITSKYSGR 586
           +P S C SS   A A+ + +  RC+L   ARP+  W  R+    +  GR
Sbjct: 133 QPSSSCSSSKPAAAAASSGSPERCYLAAAARPA-AWKPRLDRIDESFGR 180


>04_01_0526 -
           6901003-6901056,6901070-6901404,6901423-6901607,
           6902201-6904641
          Length = 1004

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/85 (22%), Positives = 36/85 (42%)
 Frame = -3

Query: 748 YNYRDTTVEQMRVELGNGNRKYRVKHTALLVNKKGTPQFEMVKTDAHYKQIQRQMYVMNA 569
           YN   +T  + ++ L NGN    V+ T LL          M+ T ++  +  R+ +V+ +
Sbjct: 406 YNQSTSTCWKKKLPLSNGNMADYVQRTVLLKVPSSNSSQSMISTSSNKWKRNRKHWVLGS 465

Query: 568 PMGFYVVKFKQNLVAVSVPRDETFC 494
            +         N   +S+    T+C
Sbjct: 466 SL-ILGTSILVNFALISIFLFGTYC 489


>02_01_0601 +
           4465775-4465924,4466070-4466531,4466613-4467445,
           4467528-4467597,4467613-4467698,4467865-4468036,
           4468481-4468519,4469410-4469430
          Length = 610

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 523 VSVPRDETFCNKELFTENNAYVAFAVENSNCERYQCADKRR 401
           +S+PR +T  NKEL T     +    E ++  + + A KRR
Sbjct: 30  MSMPRFQTSLNKELATGRGQGLGLVAEQASQSKVESAPKRR 70


>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
          Length = 1044

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 564 IGAFITYICRCICL*CASVLTISNWGVPFLLTNSAVC 674
           +  F   +C CI L C +   I    +PFL+T   +C
Sbjct: 858 VQGFPRLLCLCIVLQCPTFPVIEEGALPFLVTLQLLC 894


>06_03_1061 + 27282979-27286854
          Length = 1291

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 573  TRLWAFTWSNSNKIWWRFLCRATKRSATKNCLRKTTRTWRLPW 445
            +R+ +F WS  NK W+  L +   +   +  L +     RLPW
Sbjct: 933  SRIPSFLWSRENKCWFPKLGKINIKYCPELVLSEALLIPRLPW 975


>03_06_0604 - 35006004-35008580
          Length = 858

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 527 GGFCAARRNVLQQRTVYGKQRVRGVCRGKLKLR 429
           GGF A  R VL  RTV   +++ G+ +G+ + R
Sbjct: 504 GGFGAVYRGVLANRTVVAVKQLEGIEQGEKQFR 536


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,148,900
Number of Sequences: 37544
Number of extensions: 557952
Number of successful extensions: 1385
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)