Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k13
         (882 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022185-1|AAY51579.1|  442|Drosophila melanogaster IP01211p pro...    29   6.4  
AY071497-1|AAL49119.1| 1324|Drosophila melanogaster RE55745p pro...    29   6.4  
AE014296-2071|AAF49978.2| 1324|Drosophila melanogaster CG6947-PA...    29   6.4  
AE014297-3155|AAF55996.2| 2059|Drosophila melanogaster CG12499-P...    29   8.5  

>BT022185-1|AAY51579.1|  442|Drosophila melanogaster IP01211p
           protein.
          Length = 442

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 609 CASVLTISNWGVPFLLTNSAVCFTRYLRLPFPNSTRICS 725
           C S LT+++ G P   TNS       L LP  NST +CS
Sbjct: 249 CRSPLTVNSIGRPIRQTNSP----SPLNLPMVNSTNLCS 283


>AY071497-1|AAL49119.1| 1324|Drosophila melanogaster RE55745p protein.
          Length = 1324

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 496  CNKELFTENNAYVAFAVENSNCERYQCADKRRLSFKMHSC 377
            CN     + + +  FA EN+N     C D +R+S   H C
Sbjct: 1242 CNLRECLKRSQFEPFAAENTNSGFCSCDDLQRVSVTYHPC 1281


>AE014296-2071|AAF49978.2| 1324|Drosophila melanogaster CG6947-PA
            protein.
          Length = 1324

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 496  CNKELFTENNAYVAFAVENSNCERYQCADKRRLSFKMHSC 377
            CN     + + +  FA EN+N     C D +R+S   H C
Sbjct: 1242 CNLRECLKRSQFEPFAAENTNSGFCSCDDLQRVSVTYHPC 1281


>AE014297-3155|AAF55996.2| 2059|Drosophila melanogaster CG12499-PA
            protein.
          Length = 2059

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -3

Query: 211  LKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFCCGVQNSSPT 32
            LK    + P Y +YV+ +  LL  +H + +     Y      HT  +K++  G  N  P 
Sbjct: 818  LKGVELEEP-YDEYVELVFVLLFHYHSKPEIVLQMYEDNLSKHTNYMKSWLPGEGNGKPK 876

Query: 31   KHDHL 17
            K  HL
Sbjct: 877  KLPHL 881


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,063,775
Number of Sequences: 53049
Number of extensions: 963339
Number of successful extensions: 2925
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2924
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4291240668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)