Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k13
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical pr...    31   0.22 
U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical...    28   7.7  

>Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical
           protein C49F5.2 protein.
          Length = 708

 Score = 30.7 bits (66), Expect(2) = 0.22
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 211 LKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGT 74
           L+ K  +NP Y+D +  L      HHF  DAK     G +  H+ T
Sbjct: 519 LREKYKNNPEYYDVLDELSK----HHFHLDAKMQGSVGRFANHSCT 560



 Score = 21.4 bits (43), Expect(2) = 0.22
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 391 KMHSCNHNYSGQEIDAMVDRGIY 323
           ++HS   NYS Q  D   D+ +Y
Sbjct: 494 RLHSSLENYSYQLTDCEGDKHLY 516


>U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical
           protein T20H4.2 protein.
          Length = 235

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
 Frame = -3

Query: 409 KRRLSFKMHSCNHNYSGQEIDAMVDRGIYLDYGHLKCA----YCNDFSSNSREACDSVLK 242
           K+R + K  S   +    +  A  D+ ++ + G + C      CN  SSN+R  C    +
Sbjct: 41  KKRQNEKRRSRESSKMKHQKTAKRDKPMWKEEGEISCDSESDVCNSSSSNNRSRCRD--R 98

Query: 241 REHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLKSHHFRND 122
           R  T+      +H+N D+ ++  +  R +      +FR D
Sbjct: 99  RRRTDYG--RRRHRNSDSRSHERWSTRRRQTTPEGNFRCD 136


>AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical
           protein F52C6.14 protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 364 YSCDCSCAF*TKAVACRRI 420
           Y C C C F T  VAC+ I
Sbjct: 574 YRCHCDCLFSTAGVACKHI 592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,556,716
Number of Sequences: 27780
Number of extensions: 490467
Number of successful extensions: 1485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)