Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k10
(894 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 35 0.090
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 35 0.090
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 35 0.090
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 35 0.090
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 35 0.090
L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical pr... 33 0.21
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 33 0.28
Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical pr... 33 0.36
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 33 0.36
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 31 0.84
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 31 0.84
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 31 0.84
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 31 1.5
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 31 1.5
AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical ... 31 1.5
Z46787-9|CAA86747.1| 274|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z50176-1|CAA90538.2| 408|Caenorhabditis elegans Hypothetical pr... 29 3.4
U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical pr... 29 3.4
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 29 3.4
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 29 4.5
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 29 4.5
X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic int... 29 4.5
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 29 4.5
U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate fi... 29 4.5
U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate fi... 29 4.5
U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical pr... 29 5.9
U40059-5|AAA81140.1| 191|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF016684-11|AAB66215.1| 555|Caenorhabditis elegans Hypothetical... 29 5.9
Z80215-10|CAB02271.3| 175|Caenorhabditis elegans Hypothetical p... 28 7.8
AL117195-9|CAB55016.2| 710|Caenorhabditis elegans Hypothetical ... 28 7.8
AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 34.7 bits (76), Expect = 0.090
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = -3
Query: 691 LLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEH--TNALQAVVAQKTE--ELF 524
L +E+ Q K + K QEE+NK+L L A ++ N L+A + Q E E
Sbjct: 994 LQDEMRQQDENISKLNKERKNQEEQNKKLTEDLQAAEEQNLAANKLKAKLMQSLEDSEQT 1053
Query: 523 KKQEFIERIIAIKDKQIEAKDLQVTR-VMTDLNRMYTGFQETMQRKDEMMHKKDELLQVK 347
++E R K+K+ +L++ + + +LN+ + + ++RK+ +H L+ +
Sbjct: 1054 MEREKRNRADMDKNKRKAEGELKIAQETLEELNKSKSDAENALRRKETELHTLGMKLEDE 1113
Query: 346 DTQVSNL 326
V+ L
Sbjct: 1114 QAAVAKL 1120
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 34.7 bits (76), Expect = 0.090
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = -3
Query: 691 LLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEH--TNALQAVVAQKTE--ELF 524
L +E+ Q K + K QEE+NK+L L A ++ N L+A + Q E E
Sbjct: 994 LQDEMRQQDENISKLNKERKNQEEQNKKLTEDLQAAEEQNLAANKLKAKLMQSLEDSEQT 1053
Query: 523 KKQEFIERIIAIKDKQIEAKDLQVTR-VMTDLNRMYTGFQETMQRKDEMMHKKDELLQVK 347
++E R K+K+ +L++ + + +LN+ + + ++RK+ +H L+ +
Sbjct: 1054 MEREKRNRADMDKNKRKAEGELKIAQETLEELNKSKSDAENALRRKETELHTLGMKLEDE 1113
Query: 346 DTQVSNL 326
V+ L
Sbjct: 1114 QAAVAKL 1120
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 34.7 bits (76), Expect = 0.090
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = -3
Query: 691 LLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEH--TNALQAVVAQKTE--ELF 524
L +E+ Q K + K QEE+NK+L L A ++ N L+A + Q E E
Sbjct: 994 LQDEMRQQDENISKLNKERKNQEEQNKKLTEDLQAAEEQNLAANKLKAKLMQSLEDSEQT 1053
Query: 523 KKQEFIERIIAIKDKQIEAKDLQVTR-VMTDLNRMYTGFQETMQRKDEMMHKKDELLQVK 347
++E R K+K+ +L++ + + +LN+ + + ++RK+ +H L+ +
Sbjct: 1054 MEREKRNRADMDKNKRKAEGELKIAQETLEELNKSKSDAENALRRKETELHTLGMKLEDE 1113
Query: 346 DTQVSNL 326
V+ L
Sbjct: 1114 QAAVAKL 1120
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 34.7 bits (76), Expect = 0.090
Identities = 26/121 (21%), Positives = 52/121 (42%)
Frame = -3
Query: 634 KQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQ 455
+Q EE+ + L T I T + Q + + K +E+IE+ + D
Sbjct: 478 RQYEEETRSLQTN-IRTLQDEVYQHQDAITEWKNRAEKAEEYIEKENHRVQNASSSHDAD 536
Query: 454 VTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPAD 275
+TR+ + +M ++ Q KD+ + + E ++V +++ SDR +Q +
Sbjct: 537 ITRLENEKTQMEEALEKADQEKDQAIREASESVRVMKREMTEASI----TSDRQIQSLKE 592
Query: 274 K 272
K
Sbjct: 593 K 593
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 34.7 bits (76), Expect = 0.090
Identities = 26/121 (21%), Positives = 52/121 (42%)
Frame = -3
Query: 634 KQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQ 455
+Q EE+ + L T I T + Q + + K +E+IE+ + D
Sbjct: 478 RQYEEETRSLQTN-IRTLQDEVYQHQDAITEWKNRAEKAEEYIEKENHRVQNASSSHDAD 536
Query: 454 VTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPAD 275
+TR+ + +M ++ Q KD+ + + E ++V +++ SDR +Q +
Sbjct: 537 ITRLENEKTQMEEALEKADQEKDQAIREASESVRVMKREMTEASI----TSDRQIQSLKE 592
Query: 274 K 272
K
Sbjct: 593 K 593
>L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical
protein C50C3.8 protein.
Length = 410
Score = 33.5 bits (73), Expect = 0.21
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = -3
Query: 577 EHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETM 398
+H A + ++ Q + +FK +I + +I +D + V + MYTG E++
Sbjct: 228 KHIKAHRCILGQNSP-VFKSMFSSPNMIEAQKGEIHIEDAKYDSVRAMVEFMYTGATESL 286
Query: 397 QRK---DEMMHKKD--ELLQVKDTQVSNLIAKMIDLSD 299
+ + DE++ D E+L +KD Q LIA+ I+L +
Sbjct: 287 ESQGNIDEILAIADKYEVLMLKD-QCERLIAQTINLKN 323
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 33.1 bits (72), Expect = 0.28
Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Frame = -3
Query: 637 IKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDL 458
++ + ++ ++L K +E L+A +AQ EEL ++Q E I DKQ +A+ +
Sbjct: 1703 LELENDELEELRAKGGGISSEEKRRLEAKIAQLEEELEEEQSNCELAI---DKQRKAQ-V 1758
Query: 457 QVTRVMTDLNRMYTGFQETMQRKDEMMHK----KDELLQVKDTQVSNLIAKMIDLSDRAV 290
Q+ ++ TDL+ T Q+T K + K ++ +++ S A+M L + V
Sbjct: 1759 QLEQITTDLSMERTLNQKTEAEKQSLERSNRDYKAKITELESGAQSRARAQMAAL-EAKV 1817
Query: 289 QYPADK 272
QY D+
Sbjct: 1818 QYLEDQ 1823
>Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical
protein T05F1.7 protein.
Length = 484
Score = 32.7 bits (71), Expect = 0.36
Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = -3
Query: 688 LEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEF 509
++E +PQ + D ++ EK ++++ K N + + K E+ KK +
Sbjct: 83 IQEKLPQR--QKQIDEILRALNEKRREVLQKQNEIAGFRVNRTENSMKSKMEKAKKKLDE 140
Query: 508 IERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDEL-LQVKDTQVS 332
+++ ++DK+I + R +++ + +QR+ E KK+E+ ++K +V
Sbjct: 141 MKKKKIVQDKKISRLRSDIARSEKSFDKVEKDIHKEIQRQMENETKKEEIERRIKIFEVE 200
Query: 331 N 329
N
Sbjct: 201 N 201
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 32.7 bits (71), Expect = 0.36
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = -3
Query: 535 EELFKKQEFIERIIAIK-DKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDE- 362
E L K+ IE DK+ + T T +N M + +ET++ + E K+DE
Sbjct: 71 ENLDNKENIIESTFKTAIDKEDTKSCSECTEFKTYMNNMKSVLEETLEEEKEKNKKRDEA 130
Query: 361 ---LLQVKDTQVSNLIAKMIDLSDRAVQYPADKRK 266
L K+ ++ +L ++I LS+ + K K
Sbjct: 131 SKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSK 165
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 31.5 bits (68), Expect = 0.84
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Frame = -3
Query: 634 KQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELF-----KKQEFIERIIAIKD--KQ 476
K+ EE KQ KL+ E ++ + ++ EE+F K E ++++ + D ++
Sbjct: 877 KELEEVEKQGREKLLEKEREFRKTMEEM--EQNEEIFNVLERKYNEQHKKVMKMNDVLRE 934
Query: 475 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSD 299
E K Q+ TDL +ET R+D ++ + K + + L ++ LSD
Sbjct: 935 YERKIEQLNMEKTDLENENQKLRETQNRQDSHYSNLEKEVMEKSSLIDELQNQIQKLSD 993
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 31.5 bits (68), Expect = 0.84
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 5/138 (3%)
Frame = -3
Query: 622 EKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRV 443
E N+ + K+ F EH + + + L + F + K K++ + R
Sbjct: 1042 ETNESELAKVAKGFVEHRLPVVVWMNENGALLVRASAFTSIDMVKKLKKV----VNYRRN 1097
Query: 442 MTDLNRMYTGFQETMQRKDEMMHKKDELL----QVKDTQVS-NLIAKMIDLSDRAVQYPA 278
+ L TG Q+T+ K + + ++K +V N IAK+ + S RAV Y
Sbjct: 1098 ASKLTGSMTGSQQTLHSKASSNEESSSNIVAGAEIKSAEVQMNYIAKLSNSSQRAVSYAL 1157
Query: 277 DKRKHPVLCVTRDGTTFT 224
+ DG T T
Sbjct: 1158 PTQYADKFSTFNDGCTLT 1175
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 31.5 bits (68), Expect = 0.84
Identities = 36/201 (17%), Positives = 88/201 (43%), Gaps = 2/201 (0%)
Frame = -3
Query: 640 AIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKD 461
A Q++ ++ LVT L E A+++ A+ ++ Q+F +++ ++ + E K
Sbjct: 990 AAVQEKGRSSDLVTSLEGKIQELETAIESSTAENVQKSKTIQDFTDKVSLLESQICELKS 1049
Query: 460 LQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYP 281
Q ++ D N + + ++ EL+++ T + I K+ +++ +
Sbjct: 1050 -QNEQMEIDTN---LNMDQLSEMSSQLESANAELIELTRTS-AETIDKLRGEVEKSTKAM 1104
Query: 280 ADKRKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPN-PTVDWNNA- 107
D+ +H V + + Q + KHK + V++ +R + T++ + A
Sbjct: 1105 MDQEEHLAELVAKIESRDVENADQ-----AAKHKEEQERLQSVIDTLRTSQSTIEESQAK 1159
Query: 106 TDRLQSKRSKRSISFDSLEEA 44
++ L S+ + S + ++A
Sbjct: 1160 SEELNSRIKELQASIEFAQKA 1180
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 30.7 bits (66), Expect = 1.5
Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 2/207 (0%)
Frame = -3
Query: 622 EKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRV 443
EKN Q TKL +E+ N + V + E + K Q +E +D++ K L+ +
Sbjct: 180 EKNSQFQTKLAEISSENRNLERKVQKFREELIVKDQRSLE---VHQDQENTQKVLKEVKQ 236
Query: 442 MTD-LNRMYTGFQETMQRKD-EMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPADKR 269
++D L+ + T +RKD + ++D+ LQ + +++ + L + ++ +
Sbjct: 237 LSDRLDYL------TPKRKDVSRIKERDDFLQFSAKIIEETMSE-LKLKNARLERELSE- 288
Query: 268 KHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNPTVDWNNATDRLQS 89
K ++ VT++ T + +S++ + + A N+ + + + D A L+
Sbjct: 289 KEELVKVTKEELQELQKTVTQAMGDSEQATKYLHAENMKLTRQKADIRCDLLEARRNLKG 348
Query: 88 KRSKRSISFDSLEEAQQFENRIKYLXK 8
KR +EA + RI L K
Sbjct: 349 FDEKREELEKQRDEALEDVRRITELKK 375
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -3
Query: 634 KQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKD 482
+ QEE ++ ++K+ + N +AV +K ELFK+ ++R+ +KD
Sbjct: 363 EHQEEPDEDTMSKVKVLYIR--NIKEAVTEEKLNELFKEYASLDRVKKVKD 411
>AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical
protein Y32F6A.4 protein.
Length = 519
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 453 TCKSLASICLSLIAMMRSINSCFLKSSSVFCATTACSAFVCSVNVAISLVTNCL 614
TC+ L SIC+ + M S+ L S ++ A S S + I +V CL
Sbjct: 139 TCQLLVSICIDVTQFMISVVYLLLASKNIMNMIIAFSGTHISFCILILIVATCL 192
>Z46787-9|CAA86747.1| 274|Caenorhabditis elegans Hypothetical
protein C16C10.9 protein.
Length = 274
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/97 (23%), Positives = 46/97 (47%)
Frame = -3
Query: 628 QEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVT 449
Q+EK++Q+ ++ E N V+A + + +AI+ + +E + +
Sbjct: 16 QKEKDRQITREVNNLIIEQENTQNRVIAPSPQLM----------VAIR-QSVEQRQEYIR 64
Query: 448 RVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQ 338
R+ D+ RM + E + +MM K+E++Q D Q
Sbjct: 65 RMSIDIQRMLIPYGEDVYLISDMMLLKEEVVQHIDFQ 101
>Z50176-1|CAA90538.2| 408|Caenorhabditis elegans Hypothetical
protein C09G1.1 protein.
Length = 408
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 362 LVFFVHHFIFSLHSFLK 412
L FFVHH +F+L S+LK
Sbjct: 20 LFFFVHHLLFNLFSYLK 36
>U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical
protein R02E12.4 protein.
Length = 639
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = -3
Query: 505 ERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNL 326
E +A++ K+++ D RV +L++ +TM++ E+ + + L+V + NL
Sbjct: 328 ESCLAVRRKKVQVGDHTSDRVDMELHKEKELMTDTMKQMKEIGERVERQLEVNQSARKNL 387
Query: 325 IAKMIDLSDRAVQYPADKRKHPVLCVTRDGT 233
L D ++ A H + + DGT
Sbjct: 388 ------LRDLTLKQEAISLDHKSVAIGADGT 412
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = -3
Query: 598 KLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNR 425
K +A++ L + + + K++ F+ERI+ + E D + R +T + R
Sbjct: 41 KKVASYETDLKKLSTEMQRLRRDAEKRETFLERIVTAQYHPTELNDTNLARTLTSIKR 98
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -3
Query: 649 YDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKT--EELFKKQEFIERIIAIKDKQ 476
+D + + K + ++ AT + N V ++ + L ++ E + R I ++
Sbjct: 1456 FDKIVDDWKRKVDDIQKEIDATTRDSRNTSTEVFKLRSSMDNLSEQIETLRRENKIFSQE 1515
Query: 475 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDL 305
I + Q+T+ ++ + Q KDE+ H DE + + S ++ I++
Sbjct: 1516 IRDINEQITQGGRTYQEVHKSVRRLEQEKDELQHALDEAEAALEAEESKVLRLQIEV 1572
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -3
Query: 649 YDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKT--EELFKKQEFIERIIAIKDKQ 476
+D + + K + ++ AT + N V ++ + L ++ E + R I ++
Sbjct: 1456 FDKIVDDWKRKVDDIQKEIDATTRDSRNTSTEVFKLRSSMDNLSEQIETLRRENKIFSQE 1515
Query: 475 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDL 305
I + Q+T+ ++ + Q KDE+ H DE + + S ++ I++
Sbjct: 1516 IRDINEQITQGGRTYQEVHKSVRRLEQEKDELQHALDEAEAALEAEESKVLRLQIEV 1572
>X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 534
Score = 29.1 bits (62), Expect = 4.5
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Frame = -3
Query: 655 GKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQ 476
G Y +K+ EE+N++LV L + + + +E L ++ I+ K +
Sbjct: 62 GNYIDRVKKLEEQNRKLVADLDELRGKWGKDTSEIKIKYSESLSTARKDIDDAARRKAE- 120
Query: 475 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQ-VKDTQ--VSNLIAKMIDL 305
D++V R DL + +++ QR++ K + + D Q V L A+ L
Sbjct: 121 ---VDVKVARHRDDLAEYRSRYEDIQQRRESDREKISQWTNAIADAQSEVEMLRARFKQL 177
Query: 304 SDRAVQYPADKRK 266
+D + AD +
Sbjct: 178 TDEEKRVTADNSR 190
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -3
Query: 649 YDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKT--EELFKKQEFIERIIAIKDKQ 476
+D + + K + ++ AT + N V ++ + L ++ E + R I ++
Sbjct: 1456 FDKIVDDWKRKVDDIQKEIDATTRDSRNTSTEVFKLRSSMDNLSEQIETLRRENKIFSQE 1515
Query: 475 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDL 305
I + Q+T+ ++ + Q KDE+ H DE + + S ++ I++
Sbjct: 1516 IRDINEQITQGGRTYQEVHKSVRRLEQEKDELQHALDEAEAALEAEESKVLRLQIEV 1572
>U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate
filament, b protein1, isoform a protein.
Length = 558
Score = 29.1 bits (62), Expect = 4.5
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Frame = -3
Query: 655 GKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQ 476
G Y +K+ EE+N++LV L + + + +E L ++ I+ K +
Sbjct: 62 GNYIDRVKKLEEQNRKLVADLDELRGKWGKDTSEIKIKYSESLSTARKDIDDAARRKAE- 120
Query: 475 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQ-VKDTQ--VSNLIAKMIDL 305
D++V R DL + +++ QR++ K + + D Q V L A+ L
Sbjct: 121 ---VDVKVARHRDDLAEYRSRYEDIQQRRESDREKISQWTNAIADAQSEVEMLRARFKQL 177
Query: 304 SDRAVQYPADKRK 266
+D + AD +
Sbjct: 178 TDEEKRVTADNSR 190
>U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate
filament, b protein1, isoform b protein.
Length = 589
Score = 29.1 bits (62), Expect = 4.5
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Frame = -3
Query: 655 GKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQ 476
G Y +K+ EE+N++LV L + + + +E L ++ I+ K +
Sbjct: 93 GNYIDRVKKLEEQNRKLVADLDELRGKWGKDTSEIKIKYSESLSTARKDIDDAARRKAE- 151
Query: 475 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQ-VKDTQ--VSNLIAKMIDL 305
D++V R DL + +++ QR++ K + + D Q V L A+ L
Sbjct: 152 ---VDVKVARHRDDLAEYRSRYEDIQQRRESDREKISQWTNAIADAQSEVEMLRARFKQL 208
Query: 304 SDRAVQYPADKRK 266
+D + AD +
Sbjct: 209 TDEEKRVTADNSR 221
>U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical
protein F10E7.8 protein.
Length = 929
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 223 AITGQKTYVESQKHKRNIDAANIVVENIRPNPTVDWNNATD 101
AI Q Y+ Q K N+D + + +R T DW A+D
Sbjct: 779 AIKMQSRYLGRQWRKSNMDIISAIYSRVRHRMTDDWAFASD 819
>U40059-5|AAA81140.1| 191|Caenorhabditis elegans Hypothetical
protein K03C7.3 protein.
Length = 191
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 525 KSSSVFCATTACSAFVCSVNVAISLVTNCLFFSSCCLIAGSYLPVHST 668
K +S C T S F C+ + L FS+CC I G + HST
Sbjct: 19 KDASFECVTLLKSVF-CARKKKKRFFLSFLSFSTCCSILGWFFLSHST 65
>AF016684-11|AAB66215.1| 555|Caenorhabditis elegans Hypothetical
protein F45C12.5 protein.
Length = 555
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 865 NIRTASRGRDYRPRLQNSVAKQGDPLYLQPHT 770
N+++ G DY+P ++ + + LYL PHT
Sbjct: 251 NVQSIFNGLDYQPSVREHHGVKENNLYLHPHT 282
>Z80215-10|CAB02271.3| 175|Caenorhabditis elegans Hypothetical
protein C36B1.6 protein.
Length = 175
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Frame = +3
Query: 450 VTCKSLASICLSLIAMMR---SINSCFLKSSSVFCATTAC------SAFV-CSVNVAISL 599
+ C S+ S+ L++ M+ +I C L S+ F C ++F+ C+ +
Sbjct: 77 IDCCSIFSVLLNIARMVMFGGTILGCVLVIST-FSRNNECDQLLYWTSFIFCAFFIIFYS 135
Query: 600 VTNCLFFSSCCLI-AGSYLPV 659
+T C+F CC I G+Y V
Sbjct: 136 ITTCIFICCCCCIFTGAYRSV 156
>AL117195-9|CAB55016.2| 710|Caenorhabditis elegans Hypothetical
protein Y57A10A.13 protein.
Length = 710
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -3
Query: 880 G*KIQNIRTASRGRDYRPRLQNSVAKQGDPLYLQPHTVLITKSGVIQLIMKSKLPYAIEL 701
G K++ A R + +NS A++G + + P VL + L K+P A E
Sbjct: 124 GGKVEEDGGAGGAGGSRKKRRNSAARKGKNVTINPRVVLGNELAAKLLEEMLKIPLAPES 183
Query: 700 QEW 692
++W
Sbjct: 184 KQW 186
>AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical
protein Y54E5A.7 protein.
Length = 622
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Frame = -3
Query: 547 AQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQ-RK-DEMMH 374
A+ TEEL+ K IER +D + E + + T +M+ +++ Q RK + ++
Sbjct: 399 AKATEELYLKDAKIERFYIDQDTEEEMLHIDGVSMPT---KMFVELEKSGQYRKLNYILK 455
Query: 373 KKDELLQVKDTQVSNL---IAKMIDLSDRAVQYPADKRKHPV 257
E+++V N+ K+++++ V P KHP+
Sbjct: 456 MGREIMKVAGEMRGNIAPEARKVVEIATSMVSSPERPAKHPL 497
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,925,082
Number of Sequences: 27780
Number of extensions: 425752
Number of successful extensions: 1563
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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