Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k10
(894 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.93
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 5.0
DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase ... 23 5.0
DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase ... 23 5.0
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 22 6.6
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 22 6.6
AB023025-1|BAA74592.1| 133|Apis mellifera actin protein. 22 8.7
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.0 bits (52), Expect = 0.93
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 364 ELLQVKDTQVSNLIAKMIDLSD 299
+L +K SNL+AK IDLSD
Sbjct: 187 DLKHMKQEAGSNLVAKGIDLSD 208
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 74 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTFVLLAFHVR 205
+L TL +S +P+ G I+ SV +T ++L FH R
Sbjct: 241 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 74 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTFVLLAFHVR 205
+L TL +S +P+ G I+ SV +T ++L FH R
Sbjct: 241 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 74 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTFVLLAFHVR 205
+L TL +S +P+ G I+ SV +T ++L FH R
Sbjct: 241 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 5.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 74 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTFVLLAFHVR 205
+L TL +S +P+ G I+ SV +T ++L FH R
Sbjct: 309 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNFHHR 352
>DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase
isoform B protein.
Length = 931
Score = 22.6 bits (46), Expect = 5.0
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = +2
Query: 179 FVLLAFHVRLLAGNSRKRSAVARHAQHRMFALVRGVLNRAIRQI 310
F+L AF + + + KR A+H ++ ++A + +++ ++I
Sbjct: 312 FILSAFDMARIIQITPKRIQYAQHKENELYANLMKIVHEKQQEI 355
>DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase
isoform A protein.
Length = 969
Score = 22.6 bits (46), Expect = 5.0
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = +2
Query: 179 FVLLAFHVRLLAGNSRKRSAVARHAQHRMFALVRGVLNRAIRQI 310
F+L AF + + + KR A+H ++ ++A + +++ ++I
Sbjct: 350 FILSAFDMARIIQITPKRIQYAQHKENELYANLMKIVHEKQQEI 393
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 545 RHHRLQRVCVLGKCRNQFSHQLFVLFLLLFN 637
+H L R V + HQ VLF LL++
Sbjct: 85 KHGMLPRGQVFTMMNKEMRHQAVVLFRLLYS 115
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 545 RHHRLQRVCVLGKCRNQFSHQLFVLFLLLFN 637
+H L R V + HQ VLF LL++
Sbjct: 85 KHGMLPRGQVFTMMNKEMRHQAVVLFRLLYS 115
>AB023025-1|BAA74592.1| 133|Apis mellifera actin protein.
Length = 133
Score = 21.8 bits (44), Expect = 8.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 466 KDLQVTRVMTDLNRMYTGFQETMQRK 389
KDL V++ MY G + MQ++
Sbjct: 66 KDLYANTVLSGGTTMYPGIADRMQKE 91
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,058
Number of Sequences: 438
Number of extensions: 5184
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -