Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k09
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   1.4  
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z83318-6|CAI79196.1|  161|Caenorhabditis elegans Hypothetical pr...    25   10.0 
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    25   10.0 

>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 283  NYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTD 122
            N +L  I  K N L +  D IAET+ KV+ ++     +      LD LPA+  D
Sbjct: 2720 NKLLAKIDEKLNSLPK--DQIAETHRKVEDIKVTKADIVAQIDVLDKLPAKDID 2771


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 229 DAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNTKISEI 98
           DA+ E +   D + T++ G +E    L+GL AQ+   N+   +I
Sbjct: 74  DALIEEDDDDDIIITKVTGEKEDKCDLEGLLAQIAQQNSSSKDI 117


>Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01G12.1 protein.
          Length = 423

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 259 SKPNVLTRILDAI-AETNTKVDSVQTQLNGLEESFQPLDG 143
           S P + + +LD + A+T  ++DS+  ++   E   Q LDG
Sbjct: 145 SDPALESSVLDRLLAQTAQRLDSISPEIENDESGTQSLDG 184


>Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical
           protein F11C1.3 protein.
          Length = 560

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 301 LKSYTVNYILFTIMSKPNVL 242
           +K Y VNYI F  ++ PN++
Sbjct: 494 MKDYAVNYIYFNTVTIPNIV 513


>Z83318-6|CAI79196.1|  161|Caenorhabditis elegans Hypothetical
           protein F55B11.6 protein.
          Length = 161

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 181 LNGLEESFQPLDGLPAQLTDFNTKISEIQSIL 86
           +N  E     ++GL  QLT    K++EI+S +
Sbjct: 123 INKFERILAKIEGLGTQLTQQQEKLAEIRSFI 154


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 157 QPLDGLPAQLTDFNTKISEIQSILTGDT 74
           +PLD  P QL   N     I ++LTG T
Sbjct: 252 KPLDDPPIQLNPLNGTSDIINTVLTGKT 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,098,763
Number of Sequences: 27780
Number of extensions: 101252
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)