Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k08
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    29   0.59 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    29   0.78 
SPBC4C3.04c |||guanyl-nucleotide exchange factor |Schizosaccharo...    29   1.0  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   5.5  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   7.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   9.6  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   9.6  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.6  

>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = -3

Query: 457 ADLSPPQLSVKPSAPPAEPLTQHVSECKVCFDREKSVCFMPCRHLAVCTEC-------SR 299
           A++   + S K   P ++ L  +  +C +C D  +++   PC H+  C  C       + 
Sbjct: 182 AEIEKEEPSKKQVVPSSQRLADY--KCVICLDSPENLSCTPCGHI-FCNFCILSALGTTA 238

Query: 298 RCKRCCVCNAKI 263
             ++C VC  K+
Sbjct: 239 ATQKCPVCRRKV 250


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 467  FFFRNIKFAKVFINGIVFYCVDKFAILFVP 556
            FFFRN+ F  VF+  ++ Y    F IL VP
Sbjct: 1022 FFFRNL-FQIVFVLAVICYSSPMFMILIVP 1050


>SPBC4C3.04c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 296 PTRTFRAHSQVTARHETHRFFSIKTNFAFGNV 391
           PT +   HS+     ET  FF +K  FAF NV
Sbjct: 27  PTMSAMLHSETQEDLETDDFFLLKDPFAFDNV 58


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 203 FKEC---RSHLQCLLR*CFDALHNFCVAHTTALAPTRTFRA 316
           FK C   R+H    L   +  L++ CV ++T +A T+TF A
Sbjct: 130 FKNCVGFRNHKFFFLECFYLNLYSICVLYSTFVAITKTFTA 170


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 640 YYFGKAGHLRCSGCHIVFKYKSVDD 566
           YYFG AGHL   G     K   ++D
Sbjct: 745 YYFGNAGHLHIHGRTFPIKDYYIED 769


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 338 ALPSPGCVHGMFASVQALLCVQ--RKNYAAHRNITSVNIANDYDI 210
           ++ SP  +H + ++   LL     +KN+ + +    V ++N+YD+
Sbjct: 467 SMQSPSKLHSLTSNATDLLSSSSLKKNFFSQQEADEVELSNNYDL 511


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 111 QIFSKSLLQVLLCSRLIIFLSYNAIIINSLFLKNV 215
           +IF   ++ VL CSRL+  +S + ++  S ++  V
Sbjct: 406 EIFLNGVVSVLACSRLVFAVSRDGVLPFSNWISQV 440


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 512 IVFYCVDKFAILFVPALGVVYAFIFKN 592
           I  +C+  F ILF+ AL    A + KN
Sbjct: 899 ISHFCISNFLILFITALEHASAILCKN 925


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,373
Number of Sequences: 5004
Number of extensions: 61269
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)