Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k08
(807 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical pr... 44 2e-04
AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical... 43 3e-04
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 36 0.026
U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical pr... 35 0.060
U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical pr... 35 0.060
AC024817-27|AAY86296.1| 636|Caenorhabditis elegans Hypothetical... 35 0.079
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 33 0.18
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 33 0.18
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 33 0.18
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 33 0.18
Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical p... 33 0.24
Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z77655-7|CAB01133.2| 221|Caenorhabditis elegans Hypothetical pr... 31 0.97
AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical ... 30 1.7
AL034488-10|CAA22454.1| 84|Caenorhabditis elegans Hypothetical... 30 2.2
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical... 29 3.0
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 29 3.9
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation... 28 6.8
AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical... 28 6.8
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini... 28 6.8
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ... 28 6.8
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut... 28 6.8
Z81061-6|CAB02938.1| 341|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z81039-11|CAB02780.1| 341|Caenorhabditis elegans Hypothetical p... 28 9.0
>Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical
protein F16A11.1 protein.
Length = 673
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 451 LSPPQLSVKPSAPPAEPLT-QHVSE--CKVCFDREKSVCFMPCRHLAVCTECSRRCKRCC 281
LS Q ++ P E L +H+ E C +CF S +PC H C++C C
Sbjct: 537 LSTEQRTIVPRRLRLELLEKEHIPEDYCTICFAAPGSTTLLPCNHDGFCSDCCNMMDHCP 596
Query: 280 VCNAKIMQRIE 248
+C I +RI+
Sbjct: 597 LCRKPIEERIQ 607
>AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical
protein K11D12.9 protein.
Length = 400
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 388 VSECKVCFDREKSVCFMPCRHLAVCTEC--SRRCKRCCVCNAKIMQRI 251
V+EC +C + S+ FMPCRHL C+ C + + C C + I I
Sbjct: 349 VAECCICLATKPSIVFMPCRHLITCSGCYDASDFRECPTCRSTIENSI 396
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -3
Query: 382 ECKVCFDREKSVCFMPCRHLAVCTEC--SRRCK--RCCVCNA 269
EC +C + +PCRHL VC+ C S R K C +C +
Sbjct: 268 ECIICLSDIRDTVILPCRHLCVCSNCADSLRYKHNNCPICRS 309
>U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical
protein F10D7.5c protein.
Length = 437
Score = 35.1 bits (77), Expect = 0.060
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -3
Query: 382 ECKVCFDREKSVCFMPCRHLAVCTECSRRC----KRCCVCNAKIMQRIE 248
EC +C D + C H+ +C EC RR C +C A + I+
Sbjct: 385 ECTICMDAPVNSVLYTCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIK 433
>U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical
protein F10D7.5a protein.
Length = 617
Score = 35.1 bits (77), Expect = 0.060
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -3
Query: 382 ECKVCFDREKSVCFMPCRHLAVCTECSRRC----KRCCVCNAKIMQRIE 248
EC +C D + C H+ +C EC RR C +C A + I+
Sbjct: 565 ECTICMDAPVNSVLYTCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIK 613
>AC024817-27|AAY86296.1| 636|Caenorhabditis elegans Hypothetical
protein Y54G2A.40 protein.
Length = 636
Score = 34.7 bits (76), Expect = 0.079
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 358 EKSVCFMPCRHLAVCTECSRRCKRCCVCNAKIMQRIE 248
EK C+ C+H ++CT+C + K C +C AK + R E
Sbjct: 25 EKRQCYCSCQH-SLCTQCFNKYKNCPIC-AKPLVRTE 59
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 379 CKVCFDREKSVCFMPCRHLAVCTEC 305
CK+C D EK++ PC HL +C +C
Sbjct: 390 CKICDDNEKNIKIEPCGHL-LCAKC 413
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 379 CKVCFDREKSVCFMPCRHLAVCTEC 305
CK+C D EK++ PC HL +C +C
Sbjct: 390 CKICDDNEKNIKIEPCGHL-LCAKC 413
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 379 CKVCFDREKSVCFMPCRHLAVCTEC 305
CK+C D EK++ PC HL +C +C
Sbjct: 373 CKICDDNEKNIKIEPCGHL-LCAKC 396
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 379 CKVCFDREKSVCFMPCRHLAVCTEC 305
CK+C D EK++ PC HL +C +C
Sbjct: 373 CKICDDNEKNIKIEPCGHL-LCAKC 396
>Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -3
Query: 436 LSVKPSAPPAE---PLT--QHVSECKVCFDREKSVCFMPCRHLAVCTECSRRC 293
+S PS+ PA+ PL + + C +C DR K +PC+H C C C
Sbjct: 19 MSRPPSSRPADFVNPLEKIEQLLTCPICLDRYKQPKLLPCQH-TFCYPCLESC 70
>Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -3
Query: 436 LSVKPSAPPAE---PLT--QHVSECKVCFDREKSVCFMPCRHLAVCTECSRRC 293
+S PS+ PA+ PL + + C +C DR K +PC+H C C C
Sbjct: 19 MSRPPSSRPADFVNPLEKIEQLLTCPICLDRYKQPKLLPCQH-TFCYPCLESC 70
>Z77655-7|CAB01133.2| 221|Caenorhabditis elegans Hypothetical
protein C56A3.4 protein.
Length = 221
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 445 PPQLSVKPSAPPAEPLTQHVSECKVCFDREKSVCFMPCRHLAVCTECS 302
PP+ VK + + + +C +C EK V PC HL C C+
Sbjct: 151 PPKAGVKSVE---DSINEARLQCFLCKLTEKRVLLRPCNHLCFCEPCN 195
>AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical
protein Y59E9AL.5 protein.
Length = 99
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 376 KVCFDREKSVCFMPCRHLAVCTECSRRCKRCCVCNA 269
KVC + + C C + C+ CS C CC C +
Sbjct: 66 KVCVQDDCTTC--SCTSASRCSRCSPCCSGCCSCTS 99
>AL034488-10|CAA22454.1| 84|Caenorhabditis elegans Hypothetical
protein Y54G11A.11 protein.
Length = 84
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 403 PLTQHVSECKVCFDREKSVCFMPCRHLAVCTE 308
P H C+V DREK+V ++ CR VC+E
Sbjct: 27 PFCNHERVCEVKMDREKNVGYISCR---VCSE 55
>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
protein F53G12.3 protein.
Length = 1503
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 359 RKIGVFHALPSPGCVHGMF 303
+KI VFH++P+P +HG F
Sbjct: 695 QKIEVFHSIPNPSAMHGPF 713
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 385 SECKVCFDREKSVCFMPCRHLAVCTE-CSRRC-KRCCVCNAKIMQRIE 248
++C +CF + +C C+ + C CS +C + C C A + E
Sbjct: 1773 NDCGICFTTKTHICQNMCQKVLNCGHTCSAKCGESCPPCKAFCTNKCE 1820
>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
germline protein5 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -3
Query: 586 KYKSVDDAQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEIL---AADLSPPQLSVKPSA 416
+ ++V D +R + VN IE+ ++ ++D E L DL+P + V+P
Sbjct: 273 RVQTVADVLKRGENVKVKVNKIENGKISLSMKEVDQNSGEDLNPRETDLNPDAIGVRPRT 332
Query: 415 PPA 407
PPA
Sbjct: 333 PPA 335
>AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical
protein Y47D3A.22 protein.
Length = 765
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -3
Query: 370 CFDREKSVCFMPCRHLAVCTECSRR--CKRCCVC 275
C + +V PC H C +C+ + +RC VC
Sbjct: 611 CLNSVATVKLDPCGHRVACVDCTEKVAIRRCPVC 644
>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
protein MOG-5 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -3
Query: 586 KYKSVDDAQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEIL---AADLSPPQLSVKPSA 416
+ ++V D +R + VN IE+ ++ ++D E L DL+P + V+P
Sbjct: 273 RVQTVADVLKRGENVKVKVNKIENGKISLSMKEVDQNSGEDLNPRETDLNPDAIGVRPRT 332
Query: 415 PPA 407
PPA
Sbjct: 333 PPA 335
>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
protein.
Length = 1497
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 359 RKIGVFHALPSPGCVHGMF 303
+KI +FH++P+P +HG F
Sbjct: 687 QKIELFHSMPNPSAMHGPF 705
>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered
cuticle protein 3 protein.
Length = 1497
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 359 RKIGVFHALPSPGCVHGMF 303
+KI +FH++P+P +HG F
Sbjct: 687 QKIELFHSMPNPSAMHGPF 705
>Z81061-6|CAB02938.1| 341|Caenorhabditis elegans Hypothetical
protein C25D7.12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -3
Query: 433 SVKPSAPPAEPLTQHVSECKVCFDREKSVCFMPCRHLAVCTECSRRCKRCCVCNAKIM 260
SV+P A P + + K+ D++KS R + +C + K+C + AK++
Sbjct: 120 SVRPLAVPGARVAPNSESKKLRRDKDKSSKSERSRRSSKSKKCDKSAKKCDLNKAKVI 177
>Z81039-11|CAB02780.1| 341|Caenorhabditis elegans Hypothetical
protein C25D7.12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -3
Query: 433 SVKPSAPPAEPLTQHVSECKVCFDREKSVCFMPCRHLAVCTECSRRCKRCCVCNAKIM 260
SV+P A P + + K+ D++KS R + +C + K+C + AK++
Sbjct: 120 SVRPLAVPGARVAPNSESKKLRRDKDKSSKSERSRRSSKSKKCDKSAKKCDLNKAKVI 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,651,462
Number of Sequences: 27780
Number of extensions: 372871
Number of successful extensions: 1107
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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