Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k07
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.44
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.59
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 0.78
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 29 1.0
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 28 1.4
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 1.8
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 27 3.1
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 4.1
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 4.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 4.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 4.1
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 4.1
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 5.5
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 7.2
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 7.2
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 7.2
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 7.2
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 7.2
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 9.6
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.6
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 9.6
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.44
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = -3
Query: 590 AFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 411
AF H F ++ + N +E N + P+L T+ L +D P ++++ +
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437
Query: 410 FDTEALVNF 384
+T ++NF
Sbjct: 1438 ENTPLILNF 1446
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.59
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Frame = +1
Query: 376 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 549
S S +++SV + I + GLS ++ + + + +G+P +S VSVT N ++
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236
Query: 550 KLVTSGW---NLLCIKANVLN-------TTAAICRVSAL----FLNISNSGWVISRVLSI 687
+ T+GW N C+ V N T A + VS L N + S + ++ S
Sbjct: 237 TVNTNGWTSSNFKCVDDVVANIFGLDFYTAAVLSEVSILRSFALCNATTSSSLFRQIASY 296
Query: 688 AMY 696
+Y
Sbjct: 297 GVY 299
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 29.1 bits (62), Expect = 0.78
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -3
Query: 359 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 240
IAK G+SKRK+ + YE++K P DL + S T+ E
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTPP---DLKEESSTDEE 152
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 16 EFEFILSKSSMVNLNLLNSKLDVFVLIVDRNLL 114
E + +L +N +LNS+ DV + ++D+NLL
Sbjct: 40 EAKLLLPNGMSLNETVLNSESDVVIYVLDQNLL 72
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -3
Query: 647 IFRNKADTRQIAAVVFSTLAFIHNRFHPLV---TNFTNKMEFVVTETNDTS 504
IFR + R V AFI N++ PLV T++TN V +TN S
Sbjct: 93 IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 398 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSI 252
+L NF++DNC ++ + S R N S+ S D+DL +++
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 27.1 bits (57), Expect = 3.1
Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 1/130 (0%)
Frame = -3
Query: 398 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDM-DLSDFSITEVEATQYLT 222
A + E + NV + SK + R DD E PD D D D T
Sbjct: 449 AETSIEKEETNVTHLEKPVISKNDDLIRGDDLEPYDFPDIDSEDTDDDPTVSRSKTHSPV 508
Query: 221 LLLIVEHAYLHYYIFKKKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIE 42
+ + F+K+ + K + S F +LR L+ + +F +
Sbjct: 509 YVQDLCKMLKDTESFEKQRVALENASKLIKRKSAFGTELRDHADELLQTLISLQNRFDLM 568
Query: 41 DFDKINSNSV 12
+FD++ ++
Sbjct: 569 NFDEMQMTAI 578
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 176 KKKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDK 30
K K+ G F+ K SLF + + S+MS TSN + + DFDK
Sbjct: 643 KSKSVGKFDSAKYDEISSLFQSLILSSMSADTSNFSNQE----LVDFDK 687
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 4.1
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Frame = -3
Query: 803 SDEKIQKTYELAEFDLKNLSSLESYETL-----KIKLALSKYMAMLSTLEMTQPLLEIFR 639
++ I+ + L L++L+ L+S L + L +++ S + + +LEI
Sbjct: 239 NENTIEDFFGLVRARLESLNLLDSDSELLCEFPDLSLKINEDNVYASQIHLVD-ILEILT 297
Query: 638 NKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENE 468
D + ++VFST R++ LV ++ + E D IL N+
Sbjct: 298 VHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRND 354
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 4.1
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Frame = +1
Query: 376 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGS--PGMLVSLVSVTTNSILLV 549
S S + +S S+S S+ S+ H+S+ S S + S P S ++ ++S +
Sbjct: 192 SSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIS 251
Query: 550 KL-VTSGWNLLCIKANVLNTTAAICRVSALFLNIS--NSGWVISRVLS-IAMYLLSANLI 717
+ VT + + V ++TAA+ ++ N + N+G ++ V+ +A ++ A I
Sbjct: 252 TVTVTPSSSSSSTSSEVPSSTAALALNASKASNHTSLNAGAIVGIVIGCVAFAVVMALCI 311
Query: 718 F 720
F
Sbjct: 312 F 312
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 191 HYYIFKKKNYGVFEYCKSLTDHSLFTN 111
H ++ K YG+ YC L ++SL N
Sbjct: 2483 HLLVYLSKTYGLHHYCILLLENSLQNN 2509
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 498 GNACVISFSDHKLHFVSKISNK 563
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 281 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYI 180
YD D+S FS+ + A + + L L E Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.2
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -3
Query: 416 REFDTEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFS 255
R+ TE + N V++AK +F K+KNTT S ES+ D D S
Sbjct: 6 RKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKK-KDSS 64
Query: 254 ITEVE 240
+ E E
Sbjct: 65 LNESE 69
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 495 SGNACVISFSDHKLHFVSKISNKW 566
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 352 LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 468
L I+ QLSFS+ S + SRL +T+ + TP
Sbjct: 889 LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 534 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 698
L +++ +S+ KW+E + K C K+ N S K F + +G+ A + +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +1
Query: 517 VSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALFLN 645
+S+ TNS L VKL ++ + C+ + + ++ ++ ++ L L+
Sbjct: 905 ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILGLS 947
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 535 SILLVKLVTSGWNLLCIKANV 597
S +L L+ GW ++C ANV
Sbjct: 19 SCILAWLIEEGWEVICYMANV 39
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 239 ATQYLTLLLIVEHAYLHYYIFKKKNYGVFEYCKSL 135
A Q L+L ++ ++LHYYI Y + Y +S+
Sbjct: 346 AFQTLSLSSVMVTSFLHYYIMSTVTYYIPIYFQSI 380
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = -3
Query: 392 VNFENDNCNVRIAKTFGASKRK------NTTRSDDYESNKQPDYDMDLSDFSITEVEATQ 231
++ E++ +V G++KRK N ++ E+N++P D+ LSD + +
Sbjct: 126 IDGEDEKKSVGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCINE 185
Query: 230 YLTLLLI-VEHAYLHYY 183
L L+ + ++H ++ Y
Sbjct: 186 LLELVAMPIKHPEVYQY 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,681
Number of Sequences: 5004
Number of extensions: 64075
Number of successful extensions: 234
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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