Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k07
(808 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro... 31 2.5
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC... 31 2.5
AY075335-1|AAL68201.1| 475|Drosophila melanogaster GH14278p pro... 29 9.9
AY069831-1|AAL39976.1| 485|Drosophila melanogaster SD07771p pro... 29 9.9
AL138972-12|CAB72295.1| 721|Drosophila melanogaster EG:BACR7C10... 29 9.9
AE014298-419|ABC67171.1| 485|Drosophila melanogaster CG9900-PC,... 29 9.9
AE014298-418|AAF45794.1| 721|Drosophila melanogaster CG9900-PB,... 29 9.9
AE014134-3247|AAF53897.1| 475|Drosophila melanogaster CG2493-PA... 29 9.9
>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
Length = 16215
Score = 30.7 bits (66), Expect = 2.5
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -3
Query: 374 NCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAY 195
N N+R + T+ +K T+S ++PD+ L D+ +TE + T L + L E
Sbjct: 15052 NTNLRDSGTYTCKVKKQETQSTVEVLQRKPDFIKVLEDYEVTEKD-TAILDVELTTEATE 15110
Query: 194 LHYY 183
+ +Y
Sbjct: 15111 VTWY 15114
>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
isoform C protein.
Length = 18074
Score = 30.7 bits (66), Expect = 2.5
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -3
Query: 374 NCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAY 195
N N+R + T+ +K T+S ++PD+ L D+ +TE + T L + L E
Sbjct: 16911 NTNLRDSGTYTCKVKKQETQSTVEVLQRKPDFIKVLEDYEVTEKD-TAILDVELTTEATE 16969
Query: 194 LHYY 183
+ +Y
Sbjct: 16970 VTWY 16973
>AY075335-1|AAL68201.1| 475|Drosophila melanogaster GH14278p
protein.
Length = 475
Score = 28.7 bits (61), Expect = 9.9
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 8/142 (5%)
Frame = -3
Query: 404 TEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEV 243
T N N+NC + IAK T GAS+ SD + D DL F + V
Sbjct: 210 TSVFQNAYNENCTLNIAKSWKLFETLGASEAGKKQISDAFHLCNALKNDDDLKKF-LDYV 268
Query: 242 EATQYLTLLLIVEHAYLHYYIFKKKNYGVFEYCKSLTD-HSLFTNKLRSTMSTKTSNLLL 66
E + + L +V + Y ++ Y V + C L + HS + L + S +
Sbjct: 269 E--EVYSNLAMVNYPYNSSFLAPLPAYPVRQVCYYLKELHSTDADLLHAMSSALA---VY 323
Query: 65 SKFKFTIEDFD-KINSNSVTSG 3
+ + + + D +NSN+ SG
Sbjct: 324 TNYTQSAKCLDISVNSNADDSG 345
>AY069831-1|AAL39976.1| 485|Drosophila melanogaster SD07771p
protein.
Length = 485
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 800 DEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYMAMLSTLEMTQPLLEI 645
D+ + ++A +++ + +LE YET+K+K + YM S E L+++
Sbjct: 156 DDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYMLQQSLQERFDRLVQL 208
>AL138972-12|CAB72295.1| 721|Drosophila melanogaster
EG:BACR7C10.3,FBgn0004643;mit(1)15 protein.
Length = 721
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 800 DEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYMAMLSTLEMTQPLLEI 645
D+ + ++A +++ + +LE YET+K+K + YM S E L+++
Sbjct: 156 DDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYMLQQSLQERFDRLVQL 208
>AE014298-419|ABC67171.1| 485|Drosophila melanogaster CG9900-PC,
isoform C protein.
Length = 485
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 800 DEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYMAMLSTLEMTQPLLEI 645
D+ + ++A +++ + +LE YET+K+K + YM S E L+++
Sbjct: 156 DDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYMLQQSLQERFDRLVQL 208
>AE014298-418|AAF45794.1| 721|Drosophila melanogaster CG9900-PB,
isoform B protein.
Length = 721
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 800 DEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYMAMLSTLEMTQPLLEI 645
D+ + ++A +++ + +LE YET+K+K + YM S E L+++
Sbjct: 156 DDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYMLQQSLQERFDRLVQL 208
>AE014134-3247|AAF53897.1| 475|Drosophila melanogaster CG2493-PA
protein.
Length = 475
Score = 28.7 bits (61), Expect = 9.9
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 8/142 (5%)
Frame = -3
Query: 404 TEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEV 243
T N N+NC + IAK T GAS+ SD + D DL F + V
Sbjct: 210 TSVFQNAYNENCTLNIAKSWKLFETLGASEAGKKQISDAFHLCNALKNDDDLKKF-LDYV 268
Query: 242 EATQYLTLLLIVEHAYLHYYIFKKKNYGVFEYCKSLTD-HSLFTNKLRSTMSTKTSNLLL 66
E + + L +V + Y ++ Y V + C L + HS + L + S +
Sbjct: 269 E--EVYSNLAMVNYPYNSSFLAPLPAYPVRQVCYYLKELHSTDADLLHAMSSALA---VY 323
Query: 65 SKFKFTIEDFD-KINSNSVTSG 3
+ + + + D +NSN+ SG
Sbjct: 324 TNYTQSAKCLDISVNSNADDSG 345
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,173,927
Number of Sequences: 53049
Number of extensions: 679043
Number of successful extensions: 1742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1742
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3777934368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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