Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k07
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-16|AAG00014.1| 119|Caenorhabditis elegans Hypothetical... 30 1.7
Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 3.9
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 29 3.9
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr... 29 5.2
AL110498-6|CAL69744.1| 109|Caenorhabditis elegans Hypothetical ... 29 5.2
Z81524-7|CAD54142.2| 597|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81050-15|CAN86587.1| 597|Caenorhabditis elegans Hypothetical p... 28 6.8
Z77663-14|CAB01214.2| 568|Caenorhabditis elegans Hypothetical p... 28 6.8
U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical p... 28 6.8
AJ581300-1|CAE46113.1| 568|Caenorhabditis elegans flavin monoox... 28 6.8
AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine re... 28 6.8
Z81107-7|CAD31662.1| 119|Caenorhabditis elegans Hypothetical pr... 28 9.0
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr... 28 9.0
U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 28 9.0
AF125964-5|AAP13765.1| 722|Caenorhabditis elegans Hypothetical ... 28 9.0
AF125964-2|AAD14754.1| 726|Caenorhabditis elegans Hypothetical ... 28 9.0
>AF000263-16|AAG00014.1| 119|Caenorhabditis elegans Hypothetical
protein T08B2.4 protein.
Length = 119
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = -3
Query: 227 LTLLLIVEHAYLHYYIFKKKNYGVFEYCKSLTDHS--LFTNKLRSTMSTKTSNL 72
LTL+L + +Y+ ++ + V+EY +S +HS +FT++ + S+ T++L
Sbjct: 11 LTLVLTNDPFEADHYLAQRVDLSVYEYIQSCMEHSKKVFTDRRMRSESSPTTHL 64
>Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical
protein W09D12.1 protein.
Length = 472
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 415 RLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVK 552
RL+I I GLS+ +STPS V++ P L S+V++ L +
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAINDQEWLFFR 305
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
R03E1.1 protein.
Length = 1043
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 527 VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 426
+T + SIPG I+ + GV+ ++RP +VK
Sbjct: 992 LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 527 VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 426
+T + SIPG I+ + GV+ ++RP +VK
Sbjct: 992 LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025
>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
protein K06C4.15 protein.
Length = 1067
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 433 IDGLSTEHNSTPSFSVNKMGSPGML 507
I L T H STPS ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166
>AL110498-6|CAL69744.1| 109|Caenorhabditis elegans Hypothetical
protein Y64G10A.11 protein.
Length = 109
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 125 NGPLATCNIQTPRNFFF*KYNNANRHVRRSATELDIEWL 241
NG +C ++ P+ +F Y NR R + E W+
Sbjct: 38 NGKFQSCAVRQPKTIYFHTYKKVNRTRRHTVAECCPGWV 76
>Z81524-7|CAD54142.2| 597|Caenorhabditis elegans Hypothetical
protein F32H5.7 protein.
Length = 597
Score = 28.3 bits (60), Expect = 6.8
Identities = 24/110 (21%), Positives = 46/110 (41%)
Frame = -3
Query: 461 LLCSVDRPSIVKMLSREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPD 282
LL S RP + +L R+ +N N + +SK+K DD S++ +
Sbjct: 221 LLKSWTRPFL--LLCRKMKKRMQKKDQNGNEIKETQRLMESSKKKAKKIEDDISSHEDEE 278
Query: 281 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKKKNYGVFEYCKSLT 132
+ ++ + +TE L+ I+ + L Y + +G+ Y +T
Sbjct: 279 AEEEVEESDVTETIVLFVAFLVYIIAGSLLMSYYEEGMTFGLAIYFNFVT 328
>Z81050-15|CAN86587.1| 597|Caenorhabditis elegans Hypothetical
protein F32H5.7 protein.
Length = 597
Score = 28.3 bits (60), Expect = 6.8
Identities = 24/110 (21%), Positives = 46/110 (41%)
Frame = -3
Query: 461 LLCSVDRPSIVKMLSREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPD 282
LL S RP + +L R+ +N N + +SK+K DD S++ +
Sbjct: 221 LLKSWTRPFL--LLCRKMKKRMQKKDQNGNEIKETQRLMESSKKKAKKIEDDISSHEDEE 278
Query: 281 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKKKNYGVFEYCKSLT 132
+ ++ + +TE L+ I+ + L Y + +G+ Y +T
Sbjct: 279 AEEEVEESDVTETIVLFVAFLVYIIAGSLLMSYYEEGMTFGLAIYFNFVT 328
>Z77663-14|CAB01214.2| 568|Caenorhabditis elegans Hypothetical
protein F53F4.5 protein.
Length = 568
Score = 28.3 bits (60), Expect = 6.8
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Frame = -3
Query: 362 RIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHA----Y 195
+IAK+ S R+ T + P YD+ L FS Y TLL + HA +
Sbjct: 194 KIAKSVTISTRRGTWIFNRVSQGGMP-YDVQL--FS------RYYDTLLKTIPHAVANDF 244
Query: 194 LHYYIFKKKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDKINSNS 15
+ Y + ++ ++ V+ DH F T++ +NLL + + ED D NS
Sbjct: 245 MEYRLQQRMDHDVYGL---RPDHRFFQQ--HPTVNDALANLLCAGYITITEDIDTFTENS 299
Query: 14 V 12
V
Sbjct: 300 V 300
>U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical
protein B0507.1 protein.
Length = 615
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 499 PENPFCLQKTRGCCCAPSTD 440
PEN FC + T G CC P D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184
>AJ581300-1|CAE46113.1| 568|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 568
Score = 28.3 bits (60), Expect = 6.8
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Frame = -3
Query: 362 RIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHA----Y 195
+IAK+ S R+ T + P YD+ L FS Y TLL + HA +
Sbjct: 194 KIAKSVTISTRRGTWIFNRVSQGGMP-YDVQL--FS------RYYDTLLKTIPHAVANDF 244
Query: 194 LHYYIFKKKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDKINSNS 15
+ Y + ++ ++ V+ DH F T++ +NLL + + ED D NS
Sbjct: 245 MEYRLQQRMDHDVYGL---RPDHRFFQQ--HPTVNDALANLLCAGYITITEDIDTFTENS 299
Query: 14 V 12
V
Sbjct: 300 V 300
>AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine
receptor, class w protein40 protein.
Length = 363
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 221 LLLIVEHAYLHYYIFKKKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLL 69
LL+I+ YYIF+ + E C S T HS+ L + +S+ NLL
Sbjct: 85 LLIIISFIIYFYYIFQASF--IHEKCTSPTSHSML---LLAVLSSSIRNLL 130
>Z81107-7|CAD31662.1| 119|Caenorhabditis elegans Hypothetical
protein R07H5.11 protein.
Length = 119
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 227 LTLLLIVEHAYLHYYIFKKKNYGVFEYCKSLTDHS--LFTNKLRSTMSTKTSNL 72
LT +L + +Y+ ++ + V+EY +S +HS +FT++ + S+ T++L
Sbjct: 11 LTPVLTNDPFEADHYLAQRVDLSVYEYIRSCMEHSKKVFTDRRMRSESSPTTHL 64
>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
protein.
Length = 1613
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 341 ASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYY-IFKKKN 165
+ ++K R+ D + N P+Y++ + + ++ A L EH Y+ + K N
Sbjct: 1178 SKEQKKYERNMDRQFNGMPEYELLIKAARLNQINAVAEYKLTRETEHVLARYFDLVKTYN 1237
Query: 164 Y 162
Y
Sbjct: 1238 Y 1238
>U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical
protein K09E3.1 protein.
Length = 675
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 433 IDGLSTEHNSTPSFSVNKMGSPGML 507
I L T H STPS ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246
>AF125964-5|AAP13765.1| 722|Caenorhabditis elegans Hypothetical
protein W03G1.6b protein.
Length = 722
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/99 (21%), Positives = 44/99 (44%)
Frame = -3
Query: 587 FIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREF 408
++ + ++ L+ N ME ++ +++ P N +LCS P+I L
Sbjct: 315 YMTSTYYALLHRKRNGMEIILPMVRNSTNTAPP-----NVQNILCS---PTIHASLENNL 366
Query: 407 DTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 291
D L + ++D ++ + A +KN SD+ S++
Sbjct: 367 DKSGLEDDDSDPSSISSSSDISARLKKNCVVSDESSSSR 405
>AF125964-2|AAD14754.1| 726|Caenorhabditis elegans Hypothetical
protein W03G1.6a protein.
Length = 726
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/99 (21%), Positives = 44/99 (44%)
Frame = -3
Query: 587 FIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREF 408
++ + ++ L+ N ME ++ +++ P N +LCS P+I L
Sbjct: 315 YMTSTYYALLHRKRNGMEIILPMVRNSTNTAPP-----NVQNILCS---PTIHASLENNL 366
Query: 407 DTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 291
D L + ++D ++ + A +KN SD+ S++
Sbjct: 367 DKSGLEDDDSDPSSISSSSDISARLKKNCVVSDESSSSR 405
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,068
Number of Sequences: 27780
Number of extensions: 355739
Number of successful extensions: 1029
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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