Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k06
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    28   1.8  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    27   4.1  
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi...    25   9.5  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   9.5  

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 173 ERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 78
           ERG T  PK   K+   K  I A +  +TTA+
Sbjct: 17  ERGFTNSPKTHPKMSSLKSFIKAVRASKTTAE 48


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 677 LISLVEIYLVDVVHQHVVLMTNFFQRVEYLS 769
           L+SL  +YLV    QH++     FQRV +L+
Sbjct: 303 LVSLFILYLVRYTCQHLIKRYTKFQRVFFLT 333


>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
           Mug66|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 580 LNTLLSEITDSLPDLTLMLDKLAEQLLEAIN 488
           L+T + E  DS  + +L L+   EQ+++A+N
Sbjct: 108 LHTTILEEGDSYQESSLSLEAAVEQIVQAVN 138


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 453 LFNSLRCVCCIVLMASNNCSANLSNMSVKSGNESVISESNVFNLVKITSLAV 608
           LFN   C C +      + + +LS++S K  NE     +++++ V   ++ V
Sbjct: 469 LFNICDCPCVVFPFTKVDANIDLSDVSYKPLNEEDKENNDMYDPVLFDNMPV 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,788
Number of Sequences: 5004
Number of extensions: 55420
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)