Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k06
         (801 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL162399-2|CAI15421.1|  394|Homo sapiens SCY1-like 1 binding pro...    30   8.5  
AK021814-1|BAB13903.1|  394|Homo sapiens protein ( Homo sapiens ...    30   8.5  
AF143889-1|AAD32702.1|  187|Homo sapiens unknown protein.              30   8.5  

>AL162399-2|CAI15421.1|  394|Homo sapiens SCY1-like 1 binding
           protein 1 protein.
          Length = 394

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -2

Query: 236 KISMSDKTPTKKS-GGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQN 60
           K+ +  KT  K+    H  T+ ++   +  KK E+L Q     A E+TL    +V  L +
Sbjct: 260 KLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLH 319

Query: 59  HGESAVFQELERLEK 15
             E    + + RLE+
Sbjct: 320 EQEVESRRPVVRLER 334


>AK021814-1|BAB13903.1|  394|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11752 fis, clone HEMBA1005582, weakly similar to
           TROPOMYOSIN 1, NON-MUSCLE ISOFORM. ).
          Length = 394

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -2

Query: 236 KISMSDKTPTKKS-GGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQN 60
           K+ +  KT  K+    H  T+ ++   +  KK E+L Q     A E+TL    +V  L +
Sbjct: 260 KLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVEGLLH 319

Query: 59  HGESAVFQELERLEK 15
             E    + + RLE+
Sbjct: 320 KQEVESRRPVVRLER 334


>AF143889-1|AAD32702.1|  187|Homo sapiens unknown protein.
          Length = 187

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -2

Query: 236 KISMSDKTPTKKS-GGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQN 60
           K+ +  KT  K+    H  T+ ++   +  KK E+L Q     A E+TL    +V  L +
Sbjct: 53  KLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLH 112

Query: 59  HGESAVFQELERLEK 15
             E    + + RLE+
Sbjct: 113 EQEVESRRPVVRLER 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,520,559
Number of Sequences: 237096
Number of extensions: 1911687
Number of successful extensions: 4534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4534
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)