Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k06
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81058-11|CAH60760.1| 201|Caenorhabditis elegans Hypothetical p... 31 0.96
AF039048-11|AAB94232.1| 421|Caenorhabditis elegans Hypothetical... 31 1.3
Z81059-5|CAJ15164.1| 176|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC024201-3|AAK93866.1| 238|Caenorhabditis elegans Dnaj domain (... 29 2.9
U80030-13|AAG24169.1| 831|Caenorhabditis elegans Hypothetical p... 29 3.9
L25598-1|AAA27942.1| 129|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF045642-11|AAC02584.1| 443|Caenorhabditis elegans Hypothetical... 29 5.1
>Z81058-11|CAH60760.1| 201|Caenorhabditis elegans Hypothetical
protein F11E6.11 protein.
Length = 201
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 133 NFSDFFGGFVTPRSRNVMAWPPLFFVGVLSDMLILLSTFP*VYF 264
+FS FF G + P ++ WP VLS +++LLS F +Y+
Sbjct: 144 SFSVFFNGSIMPDCSYLVIWPTF----VLSFLILLLSIFVIIYY 183
>AF039048-11|AAB94232.1| 421|Caenorhabditis elegans Hypothetical
protein F16B4.1 protein.
Length = 421
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 114 YRCRANAAHHSRCFFFAEPRGECRFSR 34
+ CRA AA RC F E R CR S+
Sbjct: 49 FSCRACAAFFRRCHFLKENRRRCRLSK 75
>Z81059-5|CAJ15164.1| 176|Caenorhabditis elegans Hypothetical
protein F11F1.8 protein.
Length = 176
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = -3
Query: 655 MTGVRNQNVQ-LLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDK---LAEQLLEAIN 488
+ G N ++ L++ + + +L + +L + D L DL+ ++D + + ++AIN
Sbjct: 81 LLGSANDELKNLISTVFKLIEQLLNEVADILQSLPDVLGDLSKIVDDKNLTSVEKIDAIN 140
Query: 487 TMQQTQRNELNNTNSILTNL 428
++ T + ELN I+T L
Sbjct: 141 QLRGTNKIELNTIIFIITQL 160
>Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical
protein F11F1.5 protein.
Length = 246
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = -3
Query: 670 ELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLE-- 497
+L+ ++ G+ ++ L++ + T +L + +L + D L L+ ++D +E
Sbjct: 147 KLNGLVPGLGDELNNLISTIFTLIKQLLNEVADILQSLPDILGKLSKIVDDKNLTSIEKN 206
Query: 496 -AINTMQQTQRNELNNTNSILTNL 428
AIN ++ T + ELN I+T L
Sbjct: 207 NAINQLKGTNKIELNTIIFIITQL 230
>AC024201-3|AAK93866.1| 238|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 30 protein.
Length = 238
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/42 (26%), Positives = 28/42 (66%)
Frame = -1
Query: 282 LWLTISKIYSRER*QQNKHVRQNADKKKRRPCHDVTRARRNK 157
LW+T++K+++ +R ++ K + + A+++KRR + +A +
Sbjct: 146 LWITVTKVFA-DREKKRKMLEERANEEKRRSTEALVQAAEKR 186
>U80030-13|AAG24169.1| 831|Caenorhabditis elegans Hypothetical
protein K12D9.12 protein.
Length = 831
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 420 LDAKLVKIELVLFNSLRCVCCIVLMASNNCSANLSNMSVKSGNESVISESNVFNLVKITS 599
LDAKL + L + + C+ + NNC + N+ ++ G+E +++ V + S
Sbjct: 663 LDAKLCEDYGNLEDIVLCIFISMEELPNNCEIIMGNLIIEGGDEDYVTKLRVLEFL-FGS 721
Query: 600 LAVSN 614
L + N
Sbjct: 722 LIIQN 726
>L25598-1|AAA27942.1| 129|Caenorhabditis elegans Hypothetical
protein C06G4.4 protein.
Length = 129
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = -2
Query: 164 VTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGESAVFQELERLEKCG 9
+++ PK+SEK YKKA+A ++ ++ + +++ V ++ +E G
Sbjct: 1 MSEAPKRSEKSADYKKAVAKQRRIKKLRKM-KIKDRAGDVVVSDISDVEVVG 51
>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
protein T16G12.5 protein.
Length = 1142
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 224 TCLFCCQRSREYIFDIVNQSVHEVQFLSVGFV 319
TCLF C YI DI+ ++ V LS+G++
Sbjct: 574 TCLFACVEQIPYIKDILKSALDSV--LSIGYI 603
>AF045642-11|AAC02584.1| 443|Caenorhabditis elegans Hypothetical
protein C17H12.5 protein.
Length = 443
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 155 PPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGESAVFQELERLEKCGC 6
PPKK + ++ KK LR TA +SL+ HG + ++ E + GC
Sbjct: 20 PPKKWKTKKKDKKGTGK---LRKTASNASLKKHGSTHKIKKPEDITSDGC 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,072,469
Number of Sequences: 27780
Number of extensions: 329887
Number of successful extensions: 1157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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