Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10k05
(885 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p pro... 299 2e-81
AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA... 299 2e-81
X13382-1|CAA31759.1| 407|Drosophila melanogaster protein ( Dros... 299 4e-81
BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p pro... 121 1e-27
X06881-1|CAA29998.1| 123|Drosophila melanogaster protein ( Dros... 53 6e-07
AY070560-1|AAL48031.1| 712|Drosophila melanogaster LD33051p pro... 38 0.024
AF173549-1|AAL29184.1| 712|Drosophila melanogaster mystery 45A ... 38 0.024
AE013599-787|AAF58986.2| 712|Drosophila melanogaster CG8070-PA ... 38 0.024
AY089218-1|AAL89956.1| 305|Drosophila melanogaster AT01821p pro... 31 2.8
AF045470-1|AAF18568.1| 305|Drosophila melanogaster Gom protein. 31 2.8
AE013599-3345|AAF46808.2| 305|Drosophila melanogaster CG6727-PA... 31 2.8
BT021245-1|AAX33393.1| 1823|Drosophila melanogaster RE64082p pro... 30 3.7
BT011445-1|AAR99103.1| 1514|Drosophila melanogaster RE48314p pro... 30 3.7
AY061099-1|AAL28647.1| 743|Drosophila melanogaster LD08841p pro... 30 3.7
AF247766-1|AAF86226.1| 1514|Drosophila melanogaster Toll-6 protein. 30 3.7
AF243382-1|AAF68440.1| 1548|Drosophila melanogaster cytoplasmic ... 30 3.7
AE014296-2500|AAF49645.1| 1514|Drosophila melanogaster CG7250-PA... 30 3.7
AE014296-703|AAF47799.2| 1818|Drosophila melanogaster CG10847-PB... 30 3.7
AE014296-702|AAS64963.1| 1823|Drosophila melanogaster CG10847-PA... 30 3.7
>AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p
protein.
Length = 401
Score = 299 bits (735), Expect = 2e-81
Identities = 143/231 (61%), Positives = 177/231 (76%)
Frame = -2
Query: 833 FPXVVADKVQEINKTKQAVIFXRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 654
FP VV+D+VQ++ KTKQAVIF RRLK W+DI KVYKSQR RAG+G MR+RRRI R+GPL+
Sbjct: 153 FPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLV 212
Query: 653 IFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKT 474
+++KD+GL +AFRNIPG+E LAPGGH+GRFVIWT+SAF RL+ LFG+WK
Sbjct: 213 VYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKK 272
Query: 473 PSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLN 294
PS KK +NLPQPKMANTDL+RLLKS+EIRKVLR P KRV R+ R+LNPLTN + ++KLN
Sbjct: 273 PSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLN 332
Query: 293 PYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 141
PYA VLKR+A L +R K LA A+K ++L+K + A A K R K
Sbjct: 333 PYAEVLKRRAALAAEKRTVAKVLAKAKKQNVELAKSHFANVATKAAANRAK 383
>AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA
protein.
Length = 401
Score = 299 bits (735), Expect = 2e-81
Identities = 143/231 (61%), Positives = 177/231 (76%)
Frame = -2
Query: 833 FPXVVADKVQEINKTKQAVIFXRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 654
FP VV+D+VQ++ KTKQAVIF RRLK W+DI KVYKSQR RAG+G MR+RRRI R+GPL+
Sbjct: 153 FPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLV 212
Query: 653 IFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKT 474
+++KD+GL +AFRNIPG+E LAPGGH+GRFVIWT+SAF RL+ LFG+WK
Sbjct: 213 VYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKK 272
Query: 473 PSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLN 294
PS KK +NLPQPKMANTDL+RLLKS+EIRKVLR P KRV R+ R+LNPLTN + ++KLN
Sbjct: 273 PSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLN 332
Query: 293 PYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 141
PYA VLKR+A L +R K LA A+K ++L+K + A A K R K
Sbjct: 333 PYAEVLKRRAALAAEKRTVAKVLAKAKKQNVELAKSHFANVATKAAANRAK 383
>X13382-1|CAA31759.1| 407|Drosophila melanogaster protein (
Drosophila melanogastermRNA for put. ribosomal protein
L1. ).
Length = 407
Score = 299 bits (733), Expect = 4e-81
Identities = 142/226 (62%), Positives = 176/226 (77%)
Frame = -2
Query: 833 FPXVVADKVQEINKTKQAVIFXRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 654
FP VV+D+VQ++ KTKQAVIF RRLK W+DI KVYKSQR RAG+G MR+RRRI R+GPL+
Sbjct: 153 FPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLV 212
Query: 653 IFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKT 474
+++KD+GL +AFRNIPG+E LAPGGH+GRFVIWT+SAF RL+ LFG+WK
Sbjct: 213 VYDKDEGLRKAFRNIPGIETINVDKLNVLKLAPGGHVGRFVIWTESAFARLNDLFGTWKK 272
Query: 473 PSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLN 294
PS KK +NLPQPKMANTDL+RLLKS+EIRKVLR P KRV R+ R+LNPLTN + ++KLN
Sbjct: 273 PSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLN 332
Query: 293 PYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLR 156
PYA VLKR+A L +R K LA A+K ++L+K + A A K R
Sbjct: 333 PYAEVLKRRAALAAEKRTVAKVLAKAKKQNVELAKSHFANVATKAR 378
>BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p
protein.
Length = 233
Score = 121 bits (292), Expect = 1e-27
Identities = 53/76 (69%), Positives = 67/76 (88%)
Frame = -2
Query: 833 FPXVVADKVQEINKTKQAVIFXRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 654
FP VV+D+VQ++ KTKQAVIF RRLK W+DI KVYKSQR RAG+G MR+RRRI R+GPL+
Sbjct: 153 FPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLV 212
Query: 653 IFNKDQGLTRAFRNIP 606
+++KD+GL +AFRNIP
Sbjct: 213 VYDKDEGLRKAFRNIP 228
>X06881-1|CAA29998.1| 123|Drosophila melanogaster protein (
Drosophila gene forribosomal protein L1 fragment. ).
Length = 123
Score = 52.8 bits (121), Expect = 6e-07
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -2
Query: 833 FPXVVADKVQEINKTKQAVIFXRRLKAWSDILK 735
FP VV+D+VQ++ KTKQAVIF RRLK W+DI K
Sbjct: 91 FPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQK 123
>AY070560-1|AAL48031.1| 712|Drosophila melanogaster LD33051p
protein.
Length = 712
Score = 37.5 bits (83), Expect = 0.024
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = -2
Query: 467 KQKKNFNLPQPKMANTDL--TRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA-MLKL 297
K+KK+ + K A +L TR+ ++ +++ A K+ + + RK PL ++A +KL
Sbjct: 566 KEKKDMRILNQKEAAQELALTRIFTDEDFKRINAANLKKTVTSARK-RPLEQDRAEFVKL 624
Query: 296 NPYAAVLKRKAILELRRRKNLKA-LADAEKSGLKLSKRNPAMKAEKLRERRRKN 138
N + K++ + R + ++A D E+ G K + N +R+ KN
Sbjct: 625 NSIEMIYKKRKHDKESRLETVQAGRQDRERFGWKDGRVNEHCSKTNREKRKTKN 678
>AF173549-1|AAL29184.1| 712|Drosophila melanogaster mystery 45A
protein.
Length = 712
Score = 37.5 bits (83), Expect = 0.024
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = -2
Query: 467 KQKKNFNLPQPKMANTDL--TRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA-MLKL 297
K+KK+ + K A +L TR+ ++ +++ A K+ + + RK PL ++A +KL
Sbjct: 566 KEKKDMRILNQKEAAQELALTRIFTDEDFKRINAANLKKTVTSARK-RPLEQDRAEFVKL 624
Query: 296 NPYAAVLKRKAILELRRRKNLKA-LADAEKSGLKLSKRNPAMKAEKLRERRRKN 138
N + K++ + R + ++A D E+ G K + N +R+ KN
Sbjct: 625 NSIEMIYKKRKHDKESRLETVQAGRQDRERFGWKDGRVNEHCSKTNREKRKTKN 678
>AE013599-787|AAF58986.2| 712|Drosophila melanogaster CG8070-PA
protein.
Length = 712
Score = 37.5 bits (83), Expect = 0.024
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = -2
Query: 467 KQKKNFNLPQPKMANTDL--TRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA-MLKL 297
K+KK+ + K A +L TR+ ++ +++ A K+ + + RK PL ++A +KL
Sbjct: 566 KEKKDMRILNQKEAAQELALTRIFTDEDFKRINAANLKKTVTSARK-RPLEQDRAEFVKL 624
Query: 296 NPYAAVLKRKAILELRRRKNLKA-LADAEKSGLKLSKRNPAMKAEKLRERRRKN 138
N + K++ + R + ++A D E+ G K + N +R+ KN
Sbjct: 625 NSIEMIYKKRKHDKESRLETVQAGRQDRERFGWKDGRVNEHCSKTNREKRKTKN 678
>AY089218-1|AAL89956.1| 305|Drosophila melanogaster AT01821p
protein.
Length = 305
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 302 KLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 141
+L+ + + EL + LK L + EK K+ K +KAE+ +ER +K
Sbjct: 204 ELDELQRLAAEREAFELWEKDELKRLEEQEKEREKIRKEKAKVKAERDKEREKK 257
>AF045470-1|AAF18568.1| 305|Drosophila melanogaster Gom protein.
Length = 305
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 302 KLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 141
+L+ + + EL + LK L + EK K+ K +KAE+ +ER +K
Sbjct: 204 ELDELQRLAAEREAFELWEKDELKRLEEQEKEREKIRKEKAKVKAERDKEREKK 257
>AE013599-3345|AAF46808.2| 305|Drosophila melanogaster CG6727-PA
protein.
Length = 305
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 302 KLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 141
+L+ + + EL + LK L + EK K+ K +KAE+ +ER +K
Sbjct: 204 ELDELQRLAAEREAFELWEKDELKRLEEQEKEREKIRKEKAKVKAERDKEREKK 257
>BT021245-1|AAX33393.1| 1823|Drosophila melanogaster RE64082p
protein.
Length = 1823
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 518 SAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA 369
S G + +G W+ +Q+K P+PK N + ++ S E R +R+
Sbjct: 588 SGGGGDEECYGGWEQQQQQQKQSQPPRPKRPNGKMLQMQNSTESRDGMRS 637
>BT011445-1|AAR99103.1| 1514|Drosophila melanogaster RE48314p protein.
Length = 1514
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 484 HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLP 365
+GR + NKR S C S R P++ + S ++G V+P
Sbjct: 1248 NGRGNNNKRVVSGCLSGRTPSVNMYATSHEYQAGNGGVIP 1287
>AY061099-1|AAL28647.1| 743|Drosophila melanogaster LD08841p
protein.
Length = 743
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 484 HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLP 365
+GR + NKR S C S R P++ + S ++G V+P
Sbjct: 477 NGRGNNNKRVVSGCLSGRTPSVNMYATSHEYQAGNGGVIP 516
>AF247766-1|AAF86226.1| 1514|Drosophila melanogaster Toll-6 protein.
Length = 1514
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 484 HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLP 365
+GR + NKR S C S R P++ + S ++G V+P
Sbjct: 1248 NGRGNNNKRVVSGCLSGRTPSVNMYATSHEYQAGNGGVIP 1287
>AF243382-1|AAF68440.1| 1548|Drosophila melanogaster cytoplasmic
protein encore protein.
Length = 1548
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 518 SAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA 369
S G + +G W+ +Q+K P+PK N + ++ S E R +R+
Sbjct: 439 SGGGGDEECYGGWEQQQQQQKQSQPPRPKRPNGKMLQMQNSTESRDGMRS 488
>AE014296-2500|AAF49645.1| 1514|Drosophila melanogaster CG7250-PA
protein.
Length = 1514
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 484 HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLP 365
+GR + NKR S C S R P++ + S ++G V+P
Sbjct: 1248 NGRGNNNKRVVSGCLSGRTPSVNMYATSHEYQAGNGGVIP 1287
>AE014296-703|AAF47799.2| 1818|Drosophila melanogaster CG10847-PB,
isoform B protein.
Length = 1818
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 518 SAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA 369
S G + +G W+ +Q+K P+PK N + ++ S E R +R+
Sbjct: 583 SGGGGDEECYGGWEQQQQQQKQSQPPRPKRPNGKMLQMQNSTESRDGMRS 632
>AE014296-702|AAS64963.1| 1823|Drosophila melanogaster CG10847-PA,
isoform A protein.
Length = 1823
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 518 SAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA 369
S G + +G W+ +Q+K P+PK N + ++ S E R +R+
Sbjct: 588 SGGGGDEECYGGWEQQQQQQKQSQPPRPKRPNGKMLQMQNSTESRDGMRS 637
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,047,660
Number of Sequences: 53049
Number of extensions: 677481
Number of successful extensions: 2253
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2244
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4311772920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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