Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k04
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0407 + 3122383-3122445,3135572-3136393                           28   9.8  
07_01_0403 + 3077544-3077606,3090738-3091559                           28   9.8  
07_01_0399 + 3043624-3043818,3045494-3046315                           28   9.8  
01_02_0058 - 10699702-10700517,10700997-10701206                       28   9.8  

>07_01_0407 + 3122383-3122445,3135572-3136393
          Length = 294

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 666 GKLNSLA*RTNTKY*NLLDFIQGFNSHFRLLYEE 565
           GKL  ++   NT Y N LD +  FNS ++LL ++
Sbjct: 209 GKLRPVSALDNTYYRNNLDKVVNFNSDWQLLTQD 242


>07_01_0403 + 3077544-3077606,3090738-3091559
          Length = 294

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 666 GKLNSLA*RTNTKY*NLLDFIQGFNSHFRLLYEE 565
           GKL  ++   NT Y N LD +  FNS ++LL ++
Sbjct: 209 GKLRPVSALDNTYYRNNLDKVVNFNSDWQLLTQD 242


>07_01_0399 + 3043624-3043818,3045494-3046315
          Length = 338

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 666 GKLNSLA*RTNTKY*NLLDFIQGFNSHFRLLYEE 565
           GKL  ++   NT Y N LD +  FNS ++LL ++
Sbjct: 253 GKLRPVSALDNTYYRNNLDKVVNFNSDWQLLTQD 286


>01_02_0058 - 10699702-10700517,10700997-10701206
          Length = 341

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 666 GKLNSLA*RTNTKY*NLLDFIQGFNSHFRLLYEE 565
           GKL  ++   NT Y N LD +  FNS ++LL ++
Sbjct: 258 GKLRPVSALDNTYYRNNLDKVVNFNSDWQLLTQD 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,359,900
Number of Sequences: 37544
Number of extensions: 299436
Number of successful extensions: 514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)