Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k04
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   1.1  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 579 LLYEEPVYYLKHM*LCIWIPGSYSKMNQANSCI 481
           L+  EP+YY   M    W     +KM+  N CI
Sbjct: 205 LVETEPIYYNLTMVKLNWPKKRVTKMSSINPCI 237


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 80  NVQITI*KECP-KKFNFYDRDAKF 148
           NVQ+ I  EC  KKF+F D+D  F
Sbjct: 58  NVQLYI--ECAMKKFSFVDKDGNF 79


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 219 ESVLLLSIIQPIYLLDIQNLKPKINGKSSCI 311
           E V + ++ Q   +L I++L P  NG  SC+
Sbjct: 656 ERVHVTNMDQYNSILMIEHLSPDHNGNYSCV 686


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,935
Number of Sequences: 438
Number of extensions: 4936
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)