Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k02
         (558 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080546-1|AAC29475.1|  432|Anopheles gambiae S-adenosyl-L-homoc...    25   1.7  
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    23   5.1  
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    23   5.1  
AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450 CY...    23   5.1  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           23   5.1  
AF043442-1|AAC05667.1|  231|Anopheles gambiae putative pupal-spe...    23   6.8  
AF043440-1|AAC05665.1|  234|Anopheles gambiae putative pupal-spe...    23   6.8  
AF043439-1|AAC05664.1|  239|Anopheles gambiae putative pupal-spe...    23   6.8  
AF043437-1|AAC05662.1|  239|Anopheles gambiae putative pupal-spe...    23   6.8  
AF043436-1|AAC05661.1|  263|Anopheles gambiae putative pupal-spe...    23   6.8  
AF043433-3|AAC05658.1|  231|Anopheles gambiae putative pupal-spe...    23   6.8  
AF043433-2|AAC05657.1|  239|Anopheles gambiae putative pupal-spe...    23   6.8  
Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    23   9.0  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         23   9.0  
AF117750-1|AAD38336.1|  380|Anopheles gambiae serine protease 18...    23   9.0  
AF043443-1|AAC05668.1|  232|Anopheles gambiae putative pupal-spe...    23   9.0  
AF043441-1|AAC05666.1|  231|Anopheles gambiae putative pupal-spe...    23   9.0  
AF043438-1|AAC05663.1|  231|Anopheles gambiae putative pupal-spe...    23   9.0  
AF043435-1|AAC05660.1|  231|Anopheles gambiae pupal-specific cut...    23   9.0  
AF043434-1|AAC05659.1|  232|Anopheles gambiae putative pupal-spe...    23   9.0  
AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       23   9.0  

>AF080546-1|AAC29475.1|  432|Anopheles gambiae
           S-adenosyl-L-homocysteine hydrolase protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 285 LRYESRSGVHNMYREYRDLSVG 220
           L  E+ +GVHN+Y+ +R+  +G
Sbjct: 153 LSEETTTGVHNLYKMFREGRLG 174


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 460 GLVLRRELAADNLIFSQLSFSLHFWSFYLKKKS 558
           GL+++  L  ++ +F Q     ++W FY+  KS
Sbjct: 411 GLIMKSFLCPESTLFDQTVLKCNWW-FYVDCKS 442


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 460 GLVLRRELAADNLIFSQLSFSLHFWSFYLKKKS 558
           GL+++  L  ++ +F Q     ++W FY+  KS
Sbjct: 419 GLIMKSFLCPESTLFDQTVLKCNWW-FYVDCKS 450


>AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450
           CYP6Y1 protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 462 PKPPLYKMRIFSPDPIVAKSRFWY 391
           P+P  Y+   FSPD +  +  + Y
Sbjct: 414 PEPEQYRPERFSPDEVARRDPYCY 437


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 298  VLNLDGAFLWNFLNRDNFTSGLLELLKLSQEIPETRFGD 414
            +L L  +FL+N   R  F   + E+LK  +++    +GD
Sbjct: 1133 ILVLSKSFLYNEWTRFEFKGAIHEVLKRRRKLIIILYGD 1171


>AF043442-1|AAC05667.1|  231|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2c protein.
          Length = 231

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    + P  HH  PIA   AP+
Sbjct: 182 APIAHYSAPIAHHAAPIAHYAAPI 205


>AF043440-1|AAC05665.1|  234|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2d protein.
          Length = 234

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    + P  HH  PIA   AP+
Sbjct: 178 APIAHYSAPIAHHAAPIAHYAAPI 201



 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P      P  HH  PIA   AP+
Sbjct: 192 APIAHYAAPIAHHAAPIAHHAAPI 215


>AF043439-1|AAC05664.1|  239|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2b protein.
          Length = 239

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    + P  HH  PIA   AP+
Sbjct: 190 APIAHYSAPIAHHAAPIAHYAAPI 213


>AF043437-1|AAC05662.1|  239|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2b protein.
          Length = 239

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    + P  HH  PIA   AP+
Sbjct: 190 APIAHYSAPIAHHAAPIAHYAAPI 213


>AF043436-1|AAC05661.1|  263|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2c protein.
          Length = 263

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    + P  HH  PIA   AP+
Sbjct: 214 APIAHYSAPIAHHAAPIAHYAAPI 237


>AF043433-3|AAC05658.1|  231|Anopheles gambiae putative
           pupal-specific cuticular proteinprotein.
          Length = 231

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    + P  HH  PIA   AP+
Sbjct: 182 APIAHYSAPIAHHAAPIAHYAAPI 205


>AF043433-2|AAC05657.1|  239|Anopheles gambiae putative
           pupal-specific cuticular proteinprotein.
          Length = 239

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    + P  HH  PIA   AP+
Sbjct: 190 APIAHYSAPIAHHAAPIAHYAAPI 213


>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 71  GNLMVLLWNCLTCGRRHAAALITSTLMICIE*ARALCLAPI 193
           G+L V LW  L      A+   T     C+  A A+  AP+
Sbjct: 2   GSLAVRLWTVLLLLTTAASGQQTPEQSACVSHAGAILTAPL 42


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 172 PSSLNTDHQSGSNQGCCVSPSTGQTVPQQ 86
           P   N  H S S+ G    PS+ + + +Q
Sbjct: 579 PEEDNASHSSASSHGSSDGPSSSEKLKRQ 607


>AF117750-1|AAD38336.1|  380|Anopheles gambiae serine protease 18D
           protein.
          Length = 380

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 311 MGLFSGISLIETISPVVFLNFL--SCL 385
           +G ++ I+LI+    V+F NF+  +CL
Sbjct: 226 VGKYNDIALIQLTERVIFTNFIRPACL 252


>AF043443-1|AAC05668.1|  232|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2d protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    TV Q HH  PIA   AP+
Sbjct: 177 APVAHATV-QHHHAAPIAHYAAPI 199



 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P      P  HH  PIA   AP+
Sbjct: 190 APIAHYAAPIAHHAAPIAHHAAPI 213


>AF043441-1|AAC05666.1|  231|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2b protein.
          Length = 231

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    TV Q HH  PIA   AP+
Sbjct: 169 APVAHATV-QHHHAAPIAHYAAPI 191



 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P      P  HH  PIA   AP+
Sbjct: 182 APIAHYAAPIAHHAAPIAHYAAPI 205


>AF043438-1|AAC05663.1|  231|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2b protein.
          Length = 231

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    TV Q HH  PIA   AP+
Sbjct: 169 APVAHATV-QHHHAAPIAHYAAPI 191



 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P      P  HH  PIA   AP+
Sbjct: 182 APIAHYAAPIAHHAAPIAHYAAPI 205


>AF043435-1|AAC05660.1|  231|Anopheles gambiae pupal-specific
           cuticular protein CP2b protein.
          Length = 231

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    TV Q HH  PIA   AP+
Sbjct: 169 APVAHATV-QHHHAAPIAHYAAPI 191



 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P      P  HH  PIA   AP+
Sbjct: 182 APIAHYAAPIAHHAAPIAHYAAPI 205


>AF043434-1|AAC05659.1|  232|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2d protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P    TV Q HH  PIA   AP+
Sbjct: 177 APVAHATV-QHHHAAPIAHYAAPI 199



 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 118 SPSTGQTVPQQHHQIPIAQTCAPL 47
           +P      P  HH  PIA   AP+
Sbjct: 190 APIAHYAAPIAHHAAPIAHHAAPI 213


>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = -2

Query: 209 LSAIEIWELDTEPELTQYRSSKWK*SRLLRVAVHRSNSSTTAPSDSHCPNVCTTTRDLIP 30
           L    +W L+T+  L      ++     +R  V+    STT       P+V  TT  + P
Sbjct: 367 LGGAMVWSLETDDFLGVCGGGRYPLMHEIRSLVNGGTPSTTTMP----PSVAPTTSTVAP 422

Query: 29  SRTRRPST 6
             T    T
Sbjct: 423 GTTTTTPT 430


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,799
Number of Sequences: 2352
Number of extensions: 12682
Number of successful extensions: 135
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52142868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)