Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10k01
         (872 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    28   0.32 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    26   1.3  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   3.0  
AY146734-1|AAO12094.1|  176|Anopheles gambiae odorant-binding pr...    25   4.0  
EF117201-1|ABL67438.1|  481|Anopheles gambiae serpin 17 protein.       24   5.3  
AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.        24   5.3  
AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.        24   5.3  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    24   7.0  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 0.32
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 505  RDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQ 326
            RDAE+  + CE A+R TA L     D  +  +A   N Q    +A  +    E    R  
Sbjct: 988  RDAESWSRICEAAKRITASLQQAWDD-ERAALAAHGNEQHFEEVADLEARRAEIRRARND 1046

Query: 325  KRSLGRSLKR 296
            +R+  R   R
Sbjct: 1047 RRNASRRAAR 1056


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 622 NDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDA-ETARQDCENARRETAQL 446
           ND+  K   +TQ L+    +LA A+++L   A + I+  RD+     +      RE A +
Sbjct: 470 NDIWKKETAVTQTLSGYKEELARADQALRSMAGKPILNGRDSVRKVLESFLQRGREYADI 529

Query: 445 AN 440
           AN
Sbjct: 530 AN 531


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 505  RDAETARQDCENARRETAQL 446
            RDA++  + CE A+R TAQL
Sbjct: 1051 RDADSWSRICEGAKRITAQL 1070


>AY146734-1|AAO12094.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP24 protein.
          Length = 176

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 571 NADLAEANRSLILFANEMIVARRDAETARQDCENAR 464
           NAD  +   SL +F + +  AR +AE  R+  +NAR
Sbjct: 26  NADNFKLYSSLFVFPSPLQGARLEAEHVRRIHQNAR 61


>EF117201-1|ABL67438.1|  481|Anopheles gambiae serpin 17 protein.
          Length = 481

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 270 LKMTSLEPNRFRLRPSDRFC 329
           + +TSL    F LRPS+R C
Sbjct: 1   MSVTSLVDGEFLLRPSNRAC 20


>AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 334 RPQKRSLGRSLKRLGSNDVIFSSDYVPNS 248
           + Q +   R LK+LGSN + F+ +  PN+
Sbjct: 95  KEQTKLQERLLKKLGSNAIPFTFNISPNA 123


>AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 334 RPQKRSLGRSLKRLGSNDVIFSSDYVPNS 248
           + Q +   R LK+LGSN + F+ +  PN+
Sbjct: 95  KEQTKLQERLLKKLGSNAIPFTFNISPNA 123


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
           protein.
          Length = 3325

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 448 LANRMADIAQDVIAKPSNPQ 389
           L NR+ DI+++  A PS+P+
Sbjct: 408 LYNRLRDISEETSALPSHPR 427


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 951,908
Number of Sequences: 2352
Number of extensions: 19199
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93439926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)