Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j21
         (170 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    31   0.001
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    29   0.007
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    27   0.016
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    27   0.021
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    27   0.021
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   0.45 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   2.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   2.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    19   5.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    19   7.3  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 31.1 bits (67), Expect = 0.001
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 6   VMDYIDCPDLFETLQIKGELSHQLVSNIIRQLCEALNDLHKHNFIHNDIKLENV 167
           VM+Y++  DL   +Q  G+    +      ++   L  LH    ++ D+KL+NV
Sbjct: 63  VMEYVNGGDLMYQIQQCGKFKEPVAVFYASEIAIGLFFLHGRGIVYRDLKLDNV 116


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 0.007
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 81  SNIIRQLCEALNDLHKHNFIHNDIKLENV 167
           S+ I+Q+ E+++  H +  +H D+K EN+
Sbjct: 12  SHCIQQILESVHHCHHNGVVHRDLKPENL 40


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 0.016
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 30  DLFETLQIKGELSHQLVSNIIRQLCEALNDLHKHNFIHNDIKLENV 167
           +L+  L+ KG             + EA + LH  N I+ D+K EN+
Sbjct: 452 ELWTVLRDKGHFDDGTTRFYTACVVEAFDYLHSRNIIYRDLKPENL 497


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 0.021
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 87  IIRQLCEALNDLHKHNFIHNDIKLENV 167
           I   + E +  LH    +H D+KL+NV
Sbjct: 702 IALDVLEGIRYLHSQGLVHRDVKLKNV 728


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 27.1 bits (57), Expect = 0.021
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 87  IIRQLCEALNDLHKHNFIHNDIKLENV 167
           I   + E +  LH    +H D+KL+NV
Sbjct: 740 IALDVLEGIRYLHSQGLVHRDVKLKNV 766


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 0.45
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 72  QLVSNIIRQLCEALNDLHKHNFIHNDIKLENV 167
           QLV  ++R +   +  L + N++H D+   NV
Sbjct: 736 QLVG-MLRGIASGMQYLAEMNYVHRDLAARNV 766


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 54  KGELSHQLVSNIIRQLCEALND 119
           KG++   LV NII +L  AL++
Sbjct: 593 KGDMEAFLVKNIIPKLQIALSE 614


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 3   IVMDYIDCPDLFETLQIKGELSHQLVSNIIRQLCEAL 113
           ++ + + C  +F   +++   ++ LVS  +  LC AL
Sbjct: 56  VIGNILVCVAVFLVRKLRRPCNYLLVSLAVSDLCVAL 92


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 18  IDCPDLFETLQIKGELSHQLVSNIIRQLCEAL 113
           I  PD+ E  +    L+  +    I+++C AL
Sbjct: 75  IAIPDVVEAAKDADILTFVVPHQFIKRICSAL 106


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 123 HKHNFIHNDIKLEN 164
           HK   I ND  L+N
Sbjct: 16  HKEQLISNDYILDN 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,703
Number of Sequences: 438
Number of extensions: 303
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)