Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j20
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   1.1  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.1  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   1.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   1.8  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    26   1.8  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    26   2.4  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    24   9.8  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 275 RNLRVIWGHTRVIRETNRVIR 337
           + LRV++ H R +RETN ++R
Sbjct: 594 KTLRVVFEHWRYLRETNMLLR 614


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +2

Query: 212 RNVQ*TIQIFIYFTVVQKYNVRNLRVIWGHTRVI 313
           RN+   +  F+ F+ +++ N+  L+V W  + ++
Sbjct: 2   RNLNTELDFFVSFSALKEENISQLKVYWAQSNLV 35


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 336 RITRFVSRITRVCPHITRRFRTLYFCTTVKYIKICIV 226
           R+   + R T  CP++  RF  L     V Y+  C++
Sbjct: 322 RVGHILPRNTEACPNLYTRFFKLVQSPAVTYLMACLL 358


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 394 TRTKHTVIRLIT-R*SYNAFSYYAICLSYNAGMPPYNAEISHV 269
           T   +T+  L++ R + + F+Y AI +S+N  M P+ ++  HV
Sbjct: 317 TSDPYTLACLVSWRDNASLFNYAAIIISFNHQMIPHVSQFCHV 359


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 348 ITHFRITRFVSRITRVCPHITRRFRTLYFCTTVK 247
           +THF + ++ + I  +C  +    RT + C  +K
Sbjct: 178 LTHFDVKKYKTSILEICNEMYVHLRTRFECRVMK 211


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 324 FVSRITRVCPHITRRFR-TLYFCTTVKYIK 238
           F+  + R C  +TR+FR  +Y  T++ YIK
Sbjct: 108 FMMTLGRKCRILTRKFRLAVYLSTSLVYIK 137


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 168 YNKLIKNFILNNTID 212
           YN+ IK F +N+T+D
Sbjct: 87  YNEYIKEFAVNDTVD 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,491
Number of Sequences: 5004
Number of extensions: 30597
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)