Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j20
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124     27   7.2  
07_01_0943 - 7959813-7960113,7960193-7960363,7960446-7961278,796...    26   9.6  
04_01_0247 + 3251661-3251956,3252039-3252209,3252289-3252589           26   9.6  

>06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124
          Length = 904

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 337 SYYAICLSYNAGMP-PYNAEISHVIFLYYCEIYKDLYSSLHIASIV 203
           S+ A  LSY   +P P   E   V+ L  CE  +DL+   HI S++
Sbjct: 518 SFSANGLSYIDVLPTPAKFEAVRVLALQNCESLQDLHGLEHIGSLL 563


>07_01_0943 -
           7959813-7960113,7960193-7960363,7960446-7961278,
           7961360-7961821,7961899-7962606
          Length = 824

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +2

Query: 50  RLSRITGFYNARPHITR--YVQI*YN-ITNLFRIQKLGTQIL 166
           R S I G ++ +P ++   Y+ I ++ + +LFRIQKL T +L
Sbjct: 622 RESSIVGHHDHQPFLSSPAYITIGFDDLFDLFRIQKLDTGLL 663


>04_01_0247 + 3251661-3251956,3252039-3252209,3252289-3252589
          Length = 255

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +2

Query: 50  RLSRITGFYNARPHITR--YVQI*YN-ITNLFRIQKLGTQIL 166
           R S I G ++ +P ++   Y+ I ++ + +LFRIQKL T +L
Sbjct: 53  RESSIVGHHDHQPFLSSPAYITIGFDDLFDLFRIQKLDTGLL 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,361,334
Number of Sequences: 37544
Number of extensions: 156108
Number of successful extensions: 266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)